Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq3 125 2e-24 seq174 89.7 1e-13 >seq3 Length=630259 Score = 125 bits (138), Expect = 2e-24 Identities = 189/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 || || || || ||| | |||||| | | || || || | |||| ||| | | ||| Sbjct 42512 GCTGAGATCTCCCGCTCGCTCAAAGCACTGGCCAAAGAGTTGAACGTGCCGGTTGTGGCG 42571 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 |||||||||||||| || ||| ||| | || | | || || || |||| || ||| Sbjct 42572 CTGTCGCAGCTTAACCGCTCGCTGGAGCAGCGAGCCGATAAACGTCCGGTCAACTCGGAT 42631 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 ||||| || ||||| |||||||||||||||| || ||||| | |||||||| |||||| Sbjct 42632 CTGCGTGAATCGGGCTCGATCGAGCAGGATGCGGATTTGATCATGTTTATCTATCGCGAT 42691 Query 9028 GAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAG 9087 ||||| || || |||||| | || | || || ||||| | | || ||| Sbjct 42692 GAGGTTTACCACGAAAACAGCGATCTTAAAGGGATCGCGGAGATCATTCTGGGTAAACAG 42751 Query 9088 CGAAACGGGCCGATTGGCACCGTACGGCT 9116 || ||||| ||||| || || ||||| || Sbjct 42752 CGTAACGGCCCGATCGGTACGGTACGCCT 42780 >seq174 Length=42168 Score = 89.7 bits (98), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 29899 GTCGACGCGTCGATGATCGACAAGTGGGGGCTGTACGAAATTGCGCGGTATTGCGACGTC 29958 ||||| || | |||||||||||||||| ||| ||| ||| ||| ||| ||||| Sbjct 6924 GTCGATGCCACCATGATCGACAAGTGGGAGCTTTACAGTATTTCGCAGTACTGCGATCAG 6865 Query 29959 ATGGTGTCGGACGGCAGAGGCGGCGTTGAACCGCGCTTCACGTGCAACTGCGTGATCC-- 30016 |||||||| |||||| |||||| || |||||||| || || ||| | || | Sbjct 6864 ATGGTGTCTGACGGCGCAGGCGGAACGGAGCCGCGCTTTACCTGTAACGTGTTCATACAG 6805 Query 30017 AGTCGGCCGCCGACGCGTACAAGGTGCTGCAAGATATTGCCAGCG-TGTTCCGCGGCATT 30075 |||| || | || ||||| | || ||| | || |||| | ||| | ||||| |||||| Sbjct 6804 AGTCAGCAG--GATGCGTATACCGTTCTGAAGGACATTG-CGGCGATATTCCGTGGCATT 6748 Query 30076 TCGTACTGGGG 30086 ||| |||||| Sbjct 6747 ACGTTCTGGGG 6737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127535953487124