Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 >seq1 Length=970878 Score = 181 bits (200), Expect = 1e-40 Identities = 294/423 (70%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 53643 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATACGGCGTTCGCGGTT 53702 |||||||| | |||||| ||||| ||| | ||| ||||| || | || ||||||| Sbjct 158251 CAGGCGCTGATACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTT 158310 Query 53703 TTCTTCAGTGCCACGGTTATTCTTCAGTACAACGACGTCATCGAACTGGTAATGCCACAG 53762 ||||| |||||||| |||||||| || | | | |||| | |||||||| Sbjct 158311 GCCTTCAACACCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACAT 158370 Query 53763 AGGGATGTACGCTGTCGCCGCACCACCACGAATGCCGCCCTGGGAGCAAGACTTGAGCGC 53822 ||| | || || || || || ||||||| ||||||||| || || ||||| | ||| Sbjct 158371 CGGGTAGAACAGCGTGGCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGC 158430 Query 53823 CCCAGTGAGATACTTGATGAATGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGAAT 53882 || || |||| ||| ||||| ||| || || | | || ||||||||||| Sbjct 158431 GGTCTGGAAATGCTTGTAGAACGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAAT 158490 Query 53883 AGGACTGCCAATCCCACGGATAGCCCCGACGTCAAAGCCGATACCCGCACGTTTGGACAC 53942 || ||||| | | |||||||| ||| ||| | ||||| || ||||| | || || Sbjct 158491 CGGGCTGCCCAGCGCACGGATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGAC 158550 Query 53943 ATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTTTTGAT 54002 ||| | || || | ||| || |||||||| ||||||||| |||| || | ||| Sbjct 158551 ATATTTCACAATTGCGCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGAT 158610 Query 54003 CAGGACACAGGAACTGAACTGACGGGTAGGAGTACGAACACCTGCCATAATCGGGGTGGG 54062 ||| |||||||| ||||||||||| || || || || || || | ||| || || || || Sbjct 158611 CAGCACACAGGAGCTGAACTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGG 158670 Query 54063 AAG 54065 || Sbjct 158671 CAG 158673 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 138202 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 138261 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 403726 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 403667 Query 138262 CATCGTCGCCAGA 138274 || | |||||| Sbjct 403666 CAGAGGAGCCAGA 403654 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 138202 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 138261 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 479467 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 479408 Query 138262 CATCGTCGCCAGA 138274 || | |||||| Sbjct 479407 CAGAGGAGCCAGA 479395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505450956581840