Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq13 179 4e-40 seq3 125 8e-24 seq2 113 5e-20 >seq1 Length=970878 Score = 205 bits (226), Expect = 1e-47 Identities = 329/469 (70%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 41085 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 41144 ||| | || || ||||| ||||| ||| | || ||||| || || || || |||||| | Sbjct 158682 AAAATCTCCCTGCCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGC 158623 Query 41145 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT--- 41201 ||||| | || || | || || || | || | ||||| ||||| Sbjct 158622 TCCTGTGTGCTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCC---ACCTCCAGC 158566 Query 41202 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGC 41261 || || ||||| ||| | || || ||||| || || || | ||||| || | ||| || Sbjct 158565 GCAATTGTGAAATATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGT 158506 Query 41262 GCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTG 41320 || |||| || || || |||||||| | ||||| || ||| || || |||| Sbjct 158505 GCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCGTTCCATACCGGCTGT-ATCCCGTTCTA 158447 Query 41321 GAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGC 41380 || ||| |||| ||||| || || |||||||| ||||| ||||||||||| || || || Sbjct 158446 CAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGC 158387 Query 41381 AACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAA 41440 || |||| || || | |||||||||||| | |||| ||| |||||| |||||||||| Sbjct 158386 CACGCTGTTCTACCCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAA 158327 Query 41441 CAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTT 41500 | || || |||| |||||||| ||||| | || || ||||||||||| ||| || | Sbjct 158326 CCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAAGCT 158267 Query 41501 GATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCG 41549 ||||||| | ||| | |||| | || | || || ||||| || ||| Sbjct 158266 GATGTATCAGCGCCTGCTGAAAGGCGAAGATATCACCCTGTTCAGCCCG 158218 >seq13 Length=199142 Score = 179 bits (198), Expect = 4e-40 Identities = 149/182 (82%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 || ||||||||||||||| | ||||| ||||| ||||||||||||| || ||||| Sbjct 145509 GTTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCA 145450 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 ||| ||||||||||||| || || ||| | || ||||| ||||| || ||||| |||||| Sbjct 145449 GTTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGT 145390 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 ||||||||||| || ||||| ||||| |||||||| || |||| |||||||| || ||| Sbjct 145389 TTTAACTCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAAAGT 145330 Query 51398 CT 51399 || Sbjct 145329 CT 145328 >seq3 Length=630259 Score = 125 bits (138), Expect = 8e-24 Identities = 422/652 (65%), Gaps = 4/652 (1%) Strand=Plus/Minus Query 153030 AACGAAAACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCTGGT 153089 ||||| || || |||||||| || ||||||| | |||||||| ||||| || Sbjct 229964 AACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACGCAGCGCGATCTGCTGGCCGGG 229905 Query 153090 ATCGTTTCTAAACATATGGCGCGTAACCATATTCTACCGAAACATATTGTTGCGGCGCAT 153149 ||||| | ||||| || | | || || || ||| || | || |||||| Sbjct 229904 ATCGTGGCAAAACACTACGCACAGCAGCAGATCCTGCCGCGCGATGTGGTGCTGGCGCAC 229845 Query 153150 GATTCCGGTGATATTCATTATCACGATCTGGATTACAGCCCTTTCACCCC-ATACACTAA 153208 || ||| || || || ||||||||||| || ||| ||||||| ||| || | || Sbjct 229844 GAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTC-AA 229786 Query 153209 CTGCTGTCTTGTTGACCTGAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGA 153268 |||| || | || |||||||||||| | ||||| ||| ||||| || ||||| Sbjct 229785 CTGCATGCTGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCTGA 229726 Query 153269 TATCGAACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACA 153328 ||||| ||||||||||| |||| || || || | | ||| ||||||| ||| || Sbjct 229725 GATCGAGCCGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCGCA 229666 Query 153329 GATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAATGTCGATCAGGTGCTGGCCCC 153388 | | || || |||||||| || ||| || | | ||| | ||||||||||| Sbjct 229665 GGTCGCCAGCCATATTTACGGCGGCACCACCATTAACCGTATTGATGAAGTGCTGGCCCC 229606 Query 153389 TTACGTTGAAATGACGTACAACAAACACTTTAAAGA-TGCTGTTTGGTACGGGGTTCCTA 153447 | ||||| || || | || | | || ||||| || | | || Sbjct 229605 GTTTGTTGAGCAGAGCTATGCCCGGCA-TCTGGCGATTGCTGAGCAGTGGCAGATCCCGC 229547 Query 153448 AATCAAAACAGTATGCGATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCCAGTCAT 153507 | | | ||||||||| | || || || || | ||| || || ||||| Sbjct 229546 AGGCCGAGCAGTATGCGCGCCAGCGTACGGAGAAAGAGTGCTACGACGCCTTTCAGTCGC 229487 Query 153508 ACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACGATCA 153567 |||||||| || || ||| | || || || || || |||||||| |||||||| | Sbjct 229486 TGGAATATGAGGTGAATACCCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACCTTTG 229427 Query 153568 CTTTCGGTATGGGTACTGGTTGGCGCGAACGCATGATCCAGAAAGCAATTCTGAAAAACC 153627 ||| ||| |||| || | ||| | || |||| ||| | | |||||| |||| Sbjct 229426 GTTTTGGTCTGGGGACGGACTGGGCGGCCCGGCTGATTCAGCAGTCGATTCTGCTTAACC 229367 Query 153628 GTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATTCCCAAAACTGGT 153679 | | |||||||||||||| ||| || | || ||||| |||||||| Sbjct 229366 GGCTGGCCGGACTGGGTAAAAATCGCAAGACGGCGGTGTTCCCTAAACTGGT 229315 >seq2 Length=722220 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 51221 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 51280 ||||| || ||||| | ||||| ||||| || ||| |||| || ||||||||| | Sbjct 515228 GAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGATGCGATG 515169 Query 51281 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 51340 |||||||| || ||||| || || | || || || ||||| ||||| || ||||| ||| Sbjct 515168 GAACATCCAGAGAAATATCCGCAACTGACCATTCGCGTTTCCGGTTACGCTGTGCGCTTT 515109 Query 51341 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTAC 51390 ||||||||||| || ||||| | || || || |||||||||| || Sbjct 515108 AACTCACTGACTAAAGAGCAGCAGCAGGATGTGATTACCCGAACCTTCAC 515059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558022770875040