Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq3 232 1e-55 seq1 120 4e-22 >seq3 Length=630259 Score = 232 bits (256), Expect = 1e-55 Identities = 813/1250 (65%), Gaps = 42/1250 (3%) Strand=Plus/Plus Query 123912 TCATCATTTGGTTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAGCAACG 123971 ||||||| | ||||| ||||| ||||| || ||||| | ||| || || || || ||| Sbjct 228886 TCATCATCCGCATTCAGCCGAACGCCACAGGCGCCTTCCATATAGAGGATGGGCGCGACG 228945 Query 123972 CTTGCCTTGA-CACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTC 124030 | || ||| | | | ||| || | || || |||| || || |||| | | | Sbjct 228946 CGCGCTTTGGTCTTCTC-CAGCCGCGCCACCCGCGTCATCAGCGCCCGCTTAGCCAGCTG 229004 Query 124031 CATACGCTCTTCCAGAATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGAT 124090 || ||| | || || | |||||||| || || ||| || || |||||||| Sbjct 229005 CAGTCGCGCATCGAGCAGCGTCCAGAAGCGCGCTTCATCACCGCCCGCTTCCAGTGCGAT 229064 Query 124091 ACGCGGCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCATTACC 124150 ||||||| |||||| | | || |||| |||||| | ||| ||||||| | | || Sbjct 229065 GCGCGGCAGGTTCAGGCTGATTACCCCGATATTGTTGCGGCCCTCATGAATCTGCTCGCC 229124 Query 124151 GGTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAGCTACC 124210 | | || || | || | | |||||||||||| ||||| ||| ||||| || Sbjct 229125 GTTCTCTTCATAAACGCCAAG---GAAACTACGGCAGCCCATTGGGGTTTTAAACGAGCC 229181 Query 124211 AGTCACTTCTACCACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCA 124270 || |||| ||||| | ||| ||| | | |||||| |||||||| |||||| ||||| Sbjct 229182 GGTGACTTTAACCACCTGATCGTAATTGAGGATGTCGGGATACATCCGCTTGCTGGCGCA 229241 Query 124271 CTCCAGTGCCATCTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTTGTGTCCGTC 124330 |||||| |||| ||||||||| || | || | |||| || || Sbjct 229242 CTCCAGCGCCAGTTGTTTGATATCGTAATTAACGTCGCCCGCCCGGCGGTTGACGCCTTC 229301 Query 124331 TTTCAGCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTT 124390 | ||| || ||||| ||||| || | || | | | ||| || || || Sbjct 229302 GCGAATGCTGAACACCAGTTTAGGGAACACCGCCGTCTTGCGATTTTTACCCAGTCCGGC 229361 Query 124391 CATCCGAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAGTCC 124450 || ||| |||||| | | |||||| || || ||||| || || || || Sbjct 229362 CAGCCGGTTAAGCAGAATCGACTGCTGAATCAGCCGGGCCGCCCAGTCCGTCCCCAGACC 229421 Query 124451 AAACCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATA 124510 ||| || || ||| || || || || || || || | |||||| || || |||||||| Sbjct 229422 AAAACCAAAGGTGACAAACGGCGTCTGGCCGTTGGCGGTGTGCAGGGTATTCACCTCATA 229481 Query 124511 CTCTAGGCTTTGCATTGCATCATA-CACGGCTTTGCGAGTCTTTTCAATAGCG----TAT 124565 || || || | || || || ||| |||| || | | | ||| || Sbjct 229482 TTCCAGCGACTGAAAGGCGTCGTAGCAC-TCTTT----CTCCGTACGCTGGCGCGCATAC 229536 Query 124566 TGCCTTTGATCT--GGAATTTTCCAATAACGCGCTTCA---TCCAAATGCTTTTCATGTG 124620 ||| | | || || || | ||| | || | || ||| |||| ||| Sbjct 229537 TGC--TCGGCCTGCGGGATCTGCCACT---GCTCAGCAATCGCCAGATGCCGGGCATAGC 229591 Query 124621 TCATCTTAACATAAGGTGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAA 124680 || || |||| | || |||| |||| ||||| || ||||| ||| |||| || |||| Sbjct 229592 TCTGCTCAACAAACGGGGCCAGCACTTCATCAATACGGTTAATGGTGGTGCCGCCGTAAA 229651 Query 124681 TGTGACTTGCAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCT 124740 | || || || ||||| || ||||| || || || || || | ||||| ||||| | Sbjct 229652 TATGGCTGGCGACCTGCGCGATGATCTGCGCCGTCACGGCGGTGGCGGTGGCGATCGATT 229711 Query 124741 TAGGAGTTTCGATCTGTGCATTACCCA-TGCGGAACCCACGCTCTAACATGCCGTTGAGA 124799 |||| | ||||||| ||||| |||| | | |||| | || | |||||| || ||| Sbjct 229712 TAGGCGGCTCGATCTCAGCATTGCCCATTTTGAAACCGTTGGTC-AGCATGCCTTTCAGA 229770 Query 124800 TCAATCAACATGCAGTTAAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGA 124859 || |||| ||||||||| ||||| |||||||| || ||||| || ||||| || |||| Sbjct 229771 TCGATCAGCATGCAGTTGAACATCGGGAAGAAAGGGGAGTAGTCGAGATCGTGATAGTGG 229830 Query 124860 ATAAAACCAGCTTCGTGTGCTTGCAGAACTTCGGTCGGCAG---ATAGTGCTTTGCAAAG 124916 || || ||||| || ||| || ||| |||||| | |||| ||| || Sbjct 229831 ATCTCGCCGCGCTCGTGCGCCAGCACCACATCGCGCGGCAGGATCTGCTGCTGTGCGTAG 229890 Query 124917 TGCTTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTTG 124976 || || || || || || | | |||||| || ||||| || ||||| |||||| Sbjct 229891 TGTTTTGCCACGATCCCGGCCAGCAGATCGCGCTGCGTCGGGATCACTTTGCTGTCTTTG 229950 Query 124977 TTTGCATTCTCATTCATGATC----CCTTCGTCTTCTTGCTTCATCAGTCCGACGATTCG 125032 || |||||||| |||| | | | || ||| || | | ||||||| ||| | | Sbjct 229951 TTGGCATTCTCGTTCAGCAGCGCCGCATTGGTC----TGATCGACCAGTCCG-CGAATGG 230005 Query 125033 CTTGGT-CATATCGCTGTTCATATCGCGAGCAACGTCACGATCATAGCGGTATTCGATGT 125091 | || | | | ||| | |||||| || || || ||||| | ||||||||| |||| Sbjct 230006 CGTGATGTAACTGGCTCTGACGATCGCGGGCGACATCGCGATCGTGGCGGTATTCAATGT 230065 Query 125092 AGGCGCGAGCCACAGCAGGGTAACGGGAGCG-CATTAGGGTATCTTCAAC 125140 ||||||| |||| ||||||| || || ||| || || ||||| || Sbjct 230066 AGGCGCGGGCCAGTTGAGGGTAA-GGACCCGCCATCAGCGTCTCTTCTAC 230114 Score = 105 bits (116), Expect = 1e-17 Identities = 279/419 (67%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 123217 ACATATGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAG-AT 123275 ||| ||| || || |||||||| ||||| | |||||| ||| | ||||| | || | || Sbjct 228188 ACAGATGCTTCACCCGACGCTGCACTTCCTGCTGTTTACCGGCATTAAAGGGCCGCGCAT 228247 Query 123276 CCAGGGTTACCCAAATACCCACAGACGCGACGAATAACGTTCAT-CTTACGGTCATCGTG 123334 || ||| | |||| ||| || ||||| || || ||||| | | | | |||||| Sbjct 228248 CC-GGGCTGCCCAGATAGCCGCAGACCCGCCGGGTAACGGAGACGCGCGCCGG-ATCGTG 228305 Query 123335 ATTGCCACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTAAACTCACCGTTAAATCC 123394 ||||| || |||||||| | | || ||| ||| ||||| ||||| || || Sbjct 228306 GTTGCCGCAATTCGGACAGGTGAAGCCGCGGCTGGTACAGGTGAACTCGCCGTTGAAGCC 228365 Query 123395 ACATTCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGA--GTGTTCCGATAA 123452 || || | || |||||| || || || || || || || || | | || | Sbjct 228366 GCACTCGTAGCACTCATCAATCGGGGTATTGGTGCCGTAATAGGGCACGCGGTCGTAGCT 228425 Query 123453 GCATAATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCG 123512 | |||||||| || | || || || | || ||||| | || |||||| ||||| ||| Sbjct 228426 G--TAATCCCAGACATCCTCCAGCGCCTTGAGGTTGTGCTGCACATTCGGGTATTCGCCG 228483 Query 123513 TATGAAATGAAACCACCGGTACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCA 123572 || | ||||| || || | ||||| | || |||||| ||||| ||||| Sbjct 228484 TAACAGATGAATCCGCCATTCGCCAGCGGCGGATAGGGCGCTTCAAAGTCGATTTTGTCG 228543 Query 123573 TACGGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATC 123631 || ||||| ||| | || || |||||||||||||| ||||| ||| | || || Sbjct 228544 TAAGGATTGACCTTCTTCTCAACGTCGAGATGGAAGCTGTTGGTGTAGTAGCCCTTGTC 228602 >seq1 Length=970878 Score = 120 bits (132), Expect = 4e-22 Identities = 130/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114 ||||||||| | ||||||| |||||| || |||||||| || ||||| || || || Sbjct 156193 CTGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATT 156252 Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174 ||||||||||| | || || || |||| ||||| ||||||||||| ||||| ||||| Sbjct 156253 GCCTTCCATCAGCTCACGCTCAGCGAACGCGAAGGAACAGGCGAAGCTGACATAGAAACG 156312 Query 127175 AATCGCTTCCAAAGCGTTTACCGCGTGTTTGGCGAGATACAGAGCTTCTT 127224 |||||||||| || || | ||| | ||| ||||| |||||| ||| Sbjct 156313 GATCGCTTCCAGCGCATTGA-CGCTCATCAGGC-AGATATAGAGCTGCTT 156360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720672220914720