Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq575 178 2e-39 seq194 134 2e-26 seq326 131 2e-25 seq3 113 6e-20 seq476 104 3e-17 >seq575 Length=9735 Score = 178 bits (196), Expect = 2e-39 Identities = 531/808 (66%), Gaps = 21/808 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| ||||||| ||||| |||| ||||| || | || ||||| || Sbjct 2167 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 2226 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || || | |||||| | || || |||| Sbjct 2227 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTT-ACCCACGCCTCGCCGACGCTCT 2285 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 2286 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATG 2345 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | |||||||||| ||| || | || || | ||||| ||| || | Sbjct 2346 ATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCG 2405 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 | |||||||| || |||||| | || | || | | | ||| || | | || || Sbjct 2406 GCGGTATCGGTTTGAGCATCCACAACATCCGCGCGACC--GGCTCCTACATCGCCGGCAC 2463 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||| || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 2464 AAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTA 2523 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 2524 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 2580 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | || ||||| || | || ||||| || | ||||| | || Sbjct 2581 GCACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCG 2640 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||||| || ||||||||||| ||||| |||||| || | || ||| Sbjct 2641 CGCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAG 2698 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| ||||| ||||||| || || | | | || ||||| ||| ||| | | Sbjct 2699 GCCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTAT 2758 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || |||||||| ||| | | | || ||||| | || | || || | ||| Sbjct 2759 GGCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACG 2818 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || ||||| | | || ||| ||||| | || Sbjct 2819 ATCCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCC 2877 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||| |||||||||||| ||| | || || ||||||||| | || ||| Sbjct 2878 TTTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGAT 2937 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATC 112406 |||| || ||||| || || || ||| Sbjct 2938 CAAGTCGTCGAACCTGTGCACCGAGATC 2965 >seq194 Length=37609 Score = 134 bits (148), Expect = 2e-26 Identities = 281/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 12295 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 12354 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 12355 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 12414 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||| | ||||| ||| || ||| ||| ||| | ||||| Sbjct 12415 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 12474 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 13830 ||| || || ||| | || ||| ||| |||||| || | ||||||| || | | || Sbjct 12475 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 12533 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 12534 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 12593 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 13950 ||||||| ||||| ||||| || || | ||||||| ||| | || || | Sbjct 12594 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 12653 Query 13951 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 14006 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 12654 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 12709 >seq326 Length=22253 Score = 131 bits (144), Expect = 2e-25 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 9927 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 9868 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 9867 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 9808 Query 176843 TTCTTGAGATCG-TTGAACTCTTGG-TTTGATG-TGAGCTGTGTGACAGAGGCATCACGA 176899 | ||| ||||| ||||| ||| || ||| | ||| | || | | || ||||| Sbjct 9807 TGCTT--GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 9751 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||| ||||| |||| || ||||| || |||| Sbjct 9750 ACGTTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCC 9691 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 9690 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 9631 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 || | | | |||||| || ||||||||||| || Sbjct 9630 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 9596 >seq3 Length=630259 Score = 113 bits (124), Expect = 6e-20 Identities = 308/464 (66%), Gaps = 22/464 (5%) Strand=Plus/Minus Query 15836 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 15895 || ||||| ||| || || |||||| ||| || | || | || ||| |||||||| Sbjct 203167 CAGGATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCG 203108 Query 15896 ACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAAC 15955 ||||| || || ||||| || |||| ||| || || ||||||||||| || | Sbjct 203107 TCCTGGACGCAGCAGCGCAGGGTCCAGGACGTCAGGACGGTTAGTTGCGGCGATAACGAT 203048 Query 15956 AATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTG 16012 ||||||| || ||| || |||||||||||||| || | |||||| | || || Sbjct 203047 AATACCT---TCATTACCTTCGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTG 202991 Query 16013 TTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 16071 || ||||| |||| || || || ||| || | || || || || || || | Sbjct 202990 CTCACGTTCGTCATGTCCACCGCCTA-AACCGGCGCCACGCTGACGACCGACTGCGTCGA 202932 Query 16072 TCTCATCAATGAAGACGATGCATGG------TTGATTTTCGCGAGCGACTTCAAAGAGAT 16125 ||||||| || |||| ||||||||| || |||| || | ||| || | | Sbjct 202931 TCTCATCGATAAAGATGATGCATGGAGCCGCTT--TTTTGGCCTG----TTCGAACATGT 202878 Query 16126 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 16185 | || ||||| || || ||||| |||||||| || ||||||| | ||| | || Sbjct 202877 CACGCACACGGGATGCACCGACACCGACAAACATTTCAACAAAGTCAGAACCGG-AGATG 202819 Query 16186 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 16244 | | ||| || || || | ||| || ||||| ||| || || | || ||||| ||| Sbjct 202818 GTAAAGAAAGGCACCTTCGCTTCGCCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTA 202759 Query 16245 CCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || ||| | | || | ||| ||||||||| |||| Sbjct 202758 CCCGGTGGCCCCACCATCAGAACGCCTTTTGGAATCTTACCGCC 202715 >seq476 Length=13239 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || |||||| ||| | || || Sbjct 5107 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 5166 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 5167 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 5226 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 5227 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 5286 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 5287 CCACGAGTCCCC 5298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620692981145680