Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq575 134 2e-26 seq3 87.8 2e-12 >seq575 Length=9735 Score = 134 bits (148), Expect = 2e-26 Identities = 430/658 (65%), Gaps = 8/658 (1%) Strand=Plus/Minus Query 110375 CCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| ||||| || |||||||| ||| || || || |||||||| | ||| | Sbjct 2931 CCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTG 2872 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGC 110492 |||||||| ||| | | ||||| || | ||| | | | ||| |||||| ||| Sbjct 2871 CCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCG-CGGGGATCGTTTT 2813 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 || ||| | || |||| ||||| || | ||||| | || |||| || || || Sbjct 2812 CTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGAC 2753 Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612 || || || || | | |||| |||||||| | ||||| || | |||| || Sbjct 2752 TTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGAC 2693 Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672 | || |||||| || || |||||||| | ||| |||| || ||||| ||| | || Sbjct 2692 ACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTC 2633 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| ||| || |||| || || | || || | |||||| || || Sbjct 2632 CTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTC 2573 Query 110733 GAGATAGACAGCGATGGATCCCTTACGACGAC--CCGCCT-GGTTAACATAGCGTGCTGT 110789 ||| |||| |||| || ||| ||| || ||| ||| || ||||| || || Sbjct 2572 GAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGT 2513 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | ||| |||| | |||||| || | ||| || | || | || ||||| || || Sbjct 2512 GTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGAT 2453 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 ||| | || || |||| |||||| || ||| ||||| || || ||| Sbjct 2452 GTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCGCCGGCGGTCTTGGA 2393 Query 110910 AATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG 110968 || | || ||| ||| | || || | ||||| || ||||||||||| |||| | | Sbjct 2392 GATGAGCGCGCACGTCT-TAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCG 2334 Query 110969 CAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 | || || || || || | ||| || |||||||||| || |||||||| || || Sbjct 2333 TGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 2276 >seq3 Length=630259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/303 (67%), Gaps = 20/303 (7%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || ||| || || || ||||| || || || ||| || || | || |||||| Sbjct 203125 AACCTGACGGTCAAAGCGTCCTGGACGCAGCAGCGCAGGGTCCAGGACGTCAGGACGGTT 203066 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612 || ||||| || || | ||| || ||||| |||||||| ||||| || || Sbjct 203065 AGTTGCGGCGATAACGATAATACCT---TCATTACCTTCGAAACCATCCATCTCAACCAG 203009 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGT-TGGAGGGCATACCACCTGCCGAACGCT 11671 | |||||| | |||||| ||||| || || | | | || || ||| || ||||| Sbjct 203008 CATCTGGTTCAGCGTCTGCTCACGTTCGTCATGTCCACCGCCTAA-ACCGGCGCCACGCT 202950 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGG------TTGGTTGGCAC 11725 |||||| ||||| ||||||||||| || | ||| || || || ||||| Sbjct 202949 GACGACCGACTGCGTCGATCTCATCGATAAAGATGATGCATGGAGCCGCTTTTTTGGC-- 202892 Query 11726 GTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 ||||||||| | ||||| ||||| || || ||||| || ||||| ||||| | Sbjct 202891 ----CTGTTCGAACATGTCACGCACACGGGATGCACCGACACCGACAAACATTTCAACAA 202836 Query 11786 AGT 11788 ||| Sbjct 202835 AGT 202833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588929110148200