Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq9 239 1e-58 seq174 107 6e-19 >seq9 Length=205880 Score = 239 bits (264), Expect = 1e-58 Identities = 734/1117 (66%), Gaps = 31/1117 (3%) Strand=Plus/Plus Query 29842 TGGTGATTACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGT- 29900 || |||| ||||| || || |||||||| || || |||| | ||||| || |||| Sbjct 168524 TGTTGATCACTGCATTCACCAGCTGTGCCTCGTATCCCAGAACACCGTTGAC--GGTGAA 168581 Query 29901 -GTTTTTTGAGCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGC 29959 |||||||| || ||||| || |||||||| | ||||||| |||||| | | || || Sbjct 168582 GGTTTTTTGGGCGACGGCAAACGGATTCATACGCCACTGCAGGGCCTGCATGGTCACAGC 168641 Query 29960 CAGGCAATCAGCAGGCTTCCCGGCGAGGTGGGCGGGTACTGTTGTTCTGCC-CTGCGCCA 30018 ||| || || || | || || ||||| || || || || || ||||| ||| |||| Sbjct 168642 CAGACAGTCTGCGGCTTTGCCCGCGAGATGCGCCGGGACAGTGACTCTGCTGCTG-GCCA 168700 Query 30019 TGACCTCGGCAAACGCCTGTAGTTTTTGCAGTCCTGACGGGCTAAATATTGCCGCTTTTG 30078 ||| || ||||| | ||||| | ||| | ||||| || || | || ||| Sbjct 168701 TGATTTCTGCAAAGCGCACCAGTTTATCCAGGGCATCGGGGCTGAAAATAGTGGCAGTTG 168760 Query 30079 TGTCGGCCTCATTAGCCGGACTGTGAACAAT--TTCAGTGCTCATA---CGTAATCCTTT 30133 |||| | | | || | | || || || | | |||| | || |||| | Sbjct 168761 TGTCAGTGCTGTCGGGCGCA--GAGATCATCGGTTGATTTTGCATAACGCCTACTCCTGT 168818 Query 30134 TTCTTCGCCCAGGCTGGGCGTGTGATTTCTTCAATGCCGCCCCAGCTATCACTAACCCGG 30193 | | ||||| || ||||| ||| ||| |||||||||||| ||| | | || Sbjct 168819 TAATGTGCCCATGCGGGGCGCTGAATTATTTCTATGCCGCCCCAGTTATTGCCGAGGCGA 168878 Query 30194 CATTCGTGGTATGTGTTCAGACTGTTGCGGAATAAATCATGGCCTGTTGCCACATCATCC 30253 || ||| | ||| ||| ||||| | | || | || |||| Sbjct 168879 CAGGAATGGAAAGTGCACAGGTCCCGACGGAAGAGGGCGGATCCCGCGCTCATGTCATTG 168938 Query 30254 GCAGCGAGCTGGAACGTCCGCACGGGATATCGACCGCAGTTGATCGTCTCGCTCACGGCA 30313 | |||| ||| || || ||||| || || |||| ||||| || || || ||| Sbjct 168939 TCGTGCAGCTCAAACACACGAACCGGATAACGGCCACAGTCGATCGCTTCACTGACCGCA 168998 Query 30314 ATAAAAATAAACATGGGATATTCGCCGAAGTGCT-TCAGATAC-CCTTCGCGGTACATGG 30371 ||||||| ||| |||||| ||| ||||| | | | | || |||| |||||||| Sbjct 168999 ATAAAAACGAACTGCGGATATGTGCC--AGTGCAGTGATAAAAGCCCTCGCAGTACATGG 169056 Query 30372 CGTCTTGCATGTGATAGCGGAATTCTTCGACATGTCGCGGG--AATCGCTCCATATCTGC 30429 | | || | ||| || ||||| |||||| ||| ||||| || ||| |||||| Sbjct 169057 CTGCCTGAACGTGGTACCGGAACGCTTCGA--TGTGGCGGGCAAAGCGCGACATATCACT 169114 Query 30430 AACTTTTTTCACGTCAACAACAACTGGCTGGCTAGTTAGAAACTTATCCGGCCTGAATCT 30489 || ||||||||||| || | | || | | || ||| | ||||| |||| || | Sbjct 169115 CACCTTTTTCACGTCGACGATGAGAGGGCGATTCGTCAGATATTTATCTGGCCGGATGCG 169174 Query 30490 GCACAGCTCCCCGGTTTCGTCATCATTCCAGTAGATAGAAGACTCGCAATGCCCGTCTGC 30549 || || || | || || |||| |||||||| || || ||||| || ||||| || Sbjct 169175 ACAGAGTTCTTCTGTCTCTGCATCTGACCAGTAGAGGGAGGATTCGCAGTGGCCGTCAGC 169234 Query 30550 CTCCAGCAACCACCGTGCGGCGGGGTGGGATAGAGCACTCTCTCGCATTAACTTTAGCTT 30609 || || || | ||||||||| | || | | | ||||||| ||| | || || || Sbjct 169235 TTCAAGAAAAAAGCGTGCGGCGTGATGCGCCATTACGCTCTCTCTCATGAGCTGAAGTTT 169294 Query 30610 TATGCCTTGCTCTGCATCCATAACCGTCAT--TCCAGATC--TTTCACAATCCCGGAGAA 30665 ||| || ||||||||||| |||||||| ||| ||| | || || || |||| Sbjct 169295 CCGGCCCTGTTCTGCATCCATGACCGTCATGTTCCGGATGCGTGTCTCATTC----AGAA 169350 Query 30666 ACCTGGCTTCTTCTTCCTTTCC-TGCGCTGGTCCGCCTGTTTACGTCTGGCCCCACAACA 30724 | ||||| ||| | || || || | ||| |||| ||| | || |||||| | Sbjct 169351 ATGCTGCTTCGTCTGCTTTACCCTGAGA-GGTGCGCCGGTTAAAAGAAGGAGCCACAATA 169409 Query 30725 AAACGCTTATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCAGTACCCATATCC 30784 || |||||||| |||| ||| ||||| ||||||| ||||||||| || | ||||||||| Sbjct 169410 AAGCGCTTATCAAACTGTTCAGGCTCAAGCAGCATGCAGTGCAGCGCGCTTCCCATATCC 169469 Query 30785 AGCGCTTTCATCTTTTCAGTATCTACTGGCGCGCTTTTTCGCCACTTATATACTGCCGGG 30844 || || | || || ||||| || ||||| ||| ||||| || | |||||| Sbjct 169470 AGTGCGGCTGTTTTATCCGTATCCACAGGCGCATGTTTGCGCCAGAGGTAAATGGCCGGG 169529 Query 30845 TTTGTAGCTATATCATCGAGCTGGGACTTGCTTACACCTGCCCCAGAATGATAATCCTCG 30904 || || || ||||||||||| || || || || || | || | ||||| |||| Sbjct 169530 TTAACCGCAATGTCATCGAGCTGCGATTTACTGACGCCGGGACCGGCGTGATAGGCCTCA 169589 Query 30905 TTAGAAATGTCGTAATAAATGCCAGGTTCCATCATGC 30941 || | | | | ||| || || |||| |||||||| Sbjct 169590 TTGCTGAGGCCTTCATAGATACCCGGTTTCATCATGC 169626 >seq174 Length=42168 Score = 107 bits (118), Expect = 6e-19 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 268 GGCTGCGGGTCAACGCAAAGTGTCCAGTGCCCAGCCCCGCCACCACCCCCGGCCTGGCTA 327 ||||||| ||||||||| || || | | || || |||| ||||| ||| | Sbjct 26931 GGCTGCGCCTCAACGCAATCTGCCCGAAAGGTAACGCCTCCGGCACCACCGGCGTGGATG 26872 Query 328 ATGACGCCAGCGCCCGACCTGCTGACACCGTTGAACGGGATTATTTCACTCTCCGACAGC 387 ||| ||||||||||||| | ||||| ||| | |||||||||||||||| ||| || ||| Sbjct 26871 ATGCAGCCAGCGCCCGACTTACTGACGCCGCTCAACGGGATTATTTCACCCTCAGAGAGC 26812 Query 388 GAATCGCTACAGCAGAAAAGCAAATAGCCGGGTTACAGGAATACATC 434 |||||| || | |||||||||||||| || ||| |||| ||| Sbjct 26811 GAATCGAGCTCGCCGGAAAGCAAATAGCCGCTTTGCAGCAATATATC 26765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151159766638698