Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq4 109 6e-19 >seq1 Length=970878 Score = 118 bits (130), Expect = 1e-21 Identities = 272/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 54213 GTTGATCTGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGACCACGGTTGTT 54272 ||||| ||| | ||||||||| || | || | ||||| |||||| |||||||||||| Sbjct 158272 GTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTT 158331 Query 54273 CTTCAGGACCACAACATCATCAAATTGATAATGCCAGATAGGGATATAGCA-AGTTGCTG 54331 |||||| |||| | || | || |||||| || ||| || | || || |||| Sbjct 158332 CTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGG-TAGAACAGCGTGGCTG 158390 Query 54332 ATCCGCCACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTC---AGATATTTTA 54388 |||||||||| ||||| ||||| || ||||| | || | ||| | || || Sbjct 158391 CGCCGCCACGAACGCCGCCCTGAGAACAGGACTTCA---CCGCGGTCTGGAAATGCTTGT 158447 Query 54389 TGAAAGGAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGGCTACCGATGCCAC 54448 ||| || | ||| || || | | |||||| || || ||||| || | ||| Sbjct 158448 AGAACGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCAC 158507 Query 54449 GAATTGCTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAATCAACAATACTTT 54508 | || || | | | ||||| || || || | || ||||| | ||||| Sbjct 158508 GGATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGC 158567 Query 54509 TGGCTGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGAACACAAGAACTGA 54568 ||| || || ||||| ||||||| |||| ||| | ||| || ||||| || |||| Sbjct 158568 TGGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGA 158627 Query 54569 ATTGGCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGGAAG 54614 | || || |||||||| || ||||| |||||||| || || || || Sbjct 158628 ACTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAG 158673 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 378785 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 378726 Query 137691 CATCGTCGCCAAATT 137705 || | |||||||| Sbjct 378725 CAGAGGAGCCAAATT 378711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 479467 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 479408 Query 137691 CATCGTCGCCAAATT 137705 || | |||| ||| Sbjct 479407 CAGAGGAGCCAGATT 479393 >seq4 Length=447486 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 137230 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 299225 TGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 299284 Query 137290 TCCAGCCAGGGTCACCAAAT 137309 ||||| ||| |||||||| Sbjct 299285 CCCAGCAGGGGCCACCAAAT 299304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502427197330040