Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq13 196 5e-45 seq2 131 2e-25 seq1 104 2e-17 >seq13 Length=199142 Score = 196 bits (216), Expect = 5e-45 Identities = 152/181 (84%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 59805 AGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTA 59864 || || |||||||||||||| | || |||||||||||||| || || || || |||||| Sbjct 145328 AGACTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTA 145387 Query 59865 AAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTA 59924 || || || ||||| || || || ||||| |||||||||||||| ||||| ||||| ||| Sbjct 145388 AAACGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTA 145447 Query 59925 ACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCA 59984 |||||||||||||| ||||| || ||||||||||| |||||||| || || ||||||||| Sbjct 145448 ACTGCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCA 145507 Query 59985 A 59985 | Sbjct 145508 A 145508 >seq2 Length=722220 Score = 131 bits (144), Expect = 2e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 59800 ATTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 59859 ||||||| || ||| ||||| || | || || || ||||||| || |||||| | Sbjct 515045 ATTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTG 515104 Query 59860 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 59919 |||||||||| || || |||||||| || || |||||||| ||||||||||| || |||| Sbjct 515105 AGTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGAT 515164 Query 59920 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 59979 | | | ||||| ||| ||||||| || |||||| ||||| ||||| ||||| | Sbjct 515165 GTTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 515224 Query 59980 CTTCAAT 59986 |||| || Sbjct 515225 CTTCGAT 515231 >seq1 Length=970878 Score = 104 bits (114), Expect = 2e-17 Identities = 292/441 (66%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 138006 TTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTT 138065 || || || || ||||| ||||| ||||| | ||||| |||| || || ||| || Sbjct 158273 TTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTC 158332 Query 138066 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 138124 |||| || || || |||| | ||||| |||||| || || || | ||| || || || Sbjct 158333 TTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGC-GTGGCTGC 158391 Query 138125 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138184 ||||||||||| || ||||| || || || || || || ||||| ||||| || | || Sbjct 158392 GCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAA 158451 Query 138185 AGGAATAACACCAGTATG--ACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGA 138242 || ||| || ||||| ||| ||||||| | |||| || ||||| Sbjct 158452 CGGGATACAGCCGGTATGGAACG--CTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGG 158509 Query 138243 ATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCA 138302 || ||| |||| ||||| || || || || | |||| ||||| ||||||| || Sbjct 158510 ATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTG-CGCT 158568 Query 138303 GAAGCT-TTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAA 138361 | || | ||| || || | ||| || || || || | || || || || || Sbjct 158569 GGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAA 158628 Query 138362 CTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGT 138421 ||| || ||||| || || ||||| ||| || || || || | || || | || Sbjct 158629 CTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAACGT 158688 Query 138422 AGATACCGCTTCATAAAAACG 138442 || | ||| ||||| ||||| Sbjct 158689 CGAGATCGCATCATAGAAACG 158709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530770540665960