Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_016073.1 Length=157950 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq1 100 3e-16 >seq4 Length=447486 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 137449 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137508 ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 299225 TGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 299284 Query 137509 TCCAGCCAGGGTCACCA 137525 ||||| ||| ||||| Sbjct 299285 CCCAGCAGGGGCCACCA 299301 >seq1 Length=970878 Score = 100 bits (110), Expect = 3e-16 Identities = 286/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 53887 TTCACCAGGCGCTCGAACATGACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 53946 |||| |||||||| |||| | ||| | ||| | |||||||| || | || | Sbjct 158246 TTCAGCAGGCGCTGATACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACG 158305 Query 53947 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 54006 ||||| |||| | ||||||||||| || || || | | || | || |||| Sbjct 158306 CGGTTGCCTTCAACACCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGC 158365 Query 54007 CAGATGGG--AACATAGCATGTTGCCGATCCACCACGGATACCGCCTTGAGAGCAAGACT 54064 || || || | | ||| || || | || ||||| | ||||| ||||| || |||| Sbjct 158366 CACATCGGGTAGAACAGCGTG--GCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACT 158423 Query 54065 TCAGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCC 54120 ||| || ||| |||| |||| ||| || | ||| || ||||||| | ||| Sbjct 158424 TCACCGCG---GTCTGGAAATGCTTGTAGAACGGGATACAG-CCGGTATGGAACGCTTCA 158479 Query 54121 CCTTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCA 54180 || || || ||||| || | |||| || || | | || |||||||| ||| Sbjct 158480 CCGCCGCGAATCGGGCTGCCCAGCGCACGGATACGACCGGCGTTGATACCGATGCCGGCA 158539 Query 54181 CGTTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTGTCA 54240 || | || ||||| | ||| || | | ||||| || || ||||||| |||| Sbjct 158540 CGCTGAGAGACATATTTCACAATTGCGCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCG 158599 Query 54241 CCAGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATA 54300 || | ||||| ||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 158600 CCGCACTCGATCAGCACACAGGAGCTGAACTGACGTGTTGGGGTGCGTACGCCAGACATG 158659 Query 54301 ATAGGTGTTGGAAG 54314 || || || || || Sbjct 158660 ATTGGCGTCGGCAG 158673 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 137944 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 138003 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 403726 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 403667 Query 138004 CATCGTCGCCAGGATTA 138020 || | ||||| |||| Sbjct 403666 CAGAGGAGCCAGAATTA 403650 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 137944 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 138003 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 479467 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 479408 Query 138004 CATCGTCGCCAGGATTA 138020 || | |||| ||||| Sbjct 479407 CAGAGGAGCCA-GATTA 479392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505271770848400