Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq174 325 9e-85 >seq174 Length=42168 Score = 325 bits (360), Expect = 9e-85 Identities = 521/743 (70%), Gaps = 31/743 (4%) Strand=Plus/Minus Query 8425 GGGTGAAAATATGGCTACGTTGCGCGAACTGATCATCAAAATATCTGCAAACTCTCAG-T 8483 ||||||||| ||||||||| |||||||||| || || ||||| ||||| ||||| ||| | Sbjct 14165 GGGTGAAAA-ATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCT 14108 Query 8484 CATTCCAGTCTGAAATTTCTCGTGCTTCAAGAATGGGGAATGACTATTACCGGGTAATGC 8543 | || ||| ||| ||| | || || || | ||||| |||||||||||| ||| Sbjct 14107 CTTTTCAGAGTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGG 14048 Query 8544 AGACTGGAGGACGCCAATCGGCCGCAGCTTCGCGTGAAACTCAGCGTGCCTT---GG--C 8598 || ||||| ||| | | || ||||| ||||||||| ||||| || | || | Sbjct 14047 AGCAGGGAGGCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACC 13988 Query 8599 TGAG---GTAACTAGTCAAATAAACACCGCGAAGGCCTCAGCACTGGGAATGGCTGGTGC 8655 |||| | | || || || || | || | | || |||| ||| | || | Sbjct 13987 TGAGTGAGCAGCTTGT---AT-----CCACTAAAGAGACGGCGCTGGAGATGACCGGCGT 13936 Query 8656 ATTTNNNNNNNNNNNNNNGACTGGTCATCTTATATCGCTGGCCGATGAATGGAGCTCTGT 8715 || | || || || | |||| || | |||| | || Sbjct 13935 CTTCGCCGGCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGT 13876 Query 8716 TAATGCCAGGCTAAAGCAGGCTTCCCAGTCGTCAGATGATTTCA---CGGAGTCCCAGCG 8772 || ||| | || ||||||||||| ||||| ||| || |||| ||| | ||| Sbjct 13875 GAACGCCCGCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTG---CAGAA 13819 Query 8773 GGCGCTGATGGATATTAGCCAGCGAACCGGAACCGCCTTCTCTGATAATGCGAGTCTTTT 8832 ||||||||||||| |||||||| ||||| || | || || ||||||| ||||| Sbjct 13818 ATCGCTGATGGATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTA 13759 Query 8833 TGCGCGTTCAGCCGCTTCTATGCGTGAATATGGCTACAGTTCAGAAGAGGTTCTGAAGGT 8892 ||||||||| || ||||| ||||| |||| || ||| | | | || || || ||||| Sbjct 13758 TGCGCGTTCCGCTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGT 13699 Query 8893 AACCGAGGCTATATCAACAGGGCTTAAGCTGTCAGGCGCAAGCGCGTCTGAAGCGAGT-- 8950 |||||||| |||||||||||||||||||||||||||| || ||||||| || Sbjct 13698 TACCGAGGCAGTATCAACAGGGCTTAAGCTGTCAGGCGCGAGT---TCTGAAGAAAGCAG 13642 Query 8951 -TCGGTAATCACGCAGTTCAGCCAGGCTCTGGCGCAGGGTGTTCTTCGAGGCGAGGAATT 9009 || || ||||| |||||||||||||| ||||||||||| || ||||| || ||||| || Sbjct 13641 CTCTGTTATCACCCAGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTT 13582 Query 9010 TAACTCCGTCAACGAAAACGGTGATCGAGTTATCCGTGCTCTTGCCGCAGGGATGGGTGT 9069 ||| | || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct 13581 CAACGCAGTTAACGAGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGT 13522 Query 9070 AGCTCGTAAAGATCTGAAGGCAATGGCCGATCAGGGGATGCTAACCGCAGATAAAGTTGT 9129 || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 13521 TGCCCGCAAAGACCTTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGT 13462 Query 9130 CCCGGCCCTGATAAGTCAACTTG 9152 || ||||||| || || |||| Sbjct 13461 GCCAGCCCTGACCAGCCAGCTTG 13439 Score = 100 bits (110), Expect = 7e-17 Identities = 511/803 (64%), Gaps = 49/803 (6%) Strand=Plus/Minus Query 15264 ACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCGTTTAAGTGGGCA 15323 ||||| || |||| | || | |||| ||| || ||| |||| || || | || Sbjct 7053 ACCTATGATCCTGTTTCACGTAGTTATGCCGGAACGTGGCAGGGTGATTTCAAATACGCC 6994 Query 15324 TGGACGGATAACCCTGCGTGGATTTTTTACGATCTGGTTGTTTCTGACCGGTTCGGCCTT 15383 | || |||||||| || |||||||| || || ||||| | | | || || | Sbjct 6993 TATACCGATAACCCGGCATGGATTTTCTATGACCTGGTGCTGGATAAAATATTTGGTATG 6934 Query 15384 GGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAATGGACGCTTTATCAGG-TTGCTCA 15439 ||| ||| | || ||| | || || || || ||| |||||| ||| || | || Sbjct 6933 GGGACGCGTGT---CGATGCCACCATGATCGACAAGTGGGAGCTTTA-CAGTATTTCGCA 6878 Query 15440 GTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCACGCTATAC 15499 ||| || ||||||||||| | |||||| ||| || ||||| | || |||| ||| Sbjct 6877 GTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG-AACGG-----AGCCGCGCTTTAC 6824 Query 15500 CTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTACGTGATTTTGCCGC 15559 ||| ||||||| ||| ||| | | | || || || || || || || |||| || Sbjct 6823 CTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTATACCGTTCTGAAGGACATTGCGGC 6764 Query 15560 TATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATTGTGGCCCTGGCTGACATGCC 15619 || ||||||||||| || | ||||||| |||||| | | | |||||| |||| Sbjct 6763 GATATTCCGTGGCATTACGTTCTGGGGCAACAGCCAGATTTTCGTCAATGCTGACGTGCC 6704 Query 15620 GC---------------GC------GATGTTGATTACAGCTA-TACGCGCGCTAACGTTG 15657 || || |||||||||| | || |||| ||| ||||| Sbjct 6703 GCAGGTTGACTCTGACGGCAACGTTGATGTTGATTTCGTTTACCACGC-CGCAAACGTCA 6645 Query 15658 TTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGCTGG 15717 ||| || ||||||||| || || ||| | |||| ||||||||| || | | Sbjct 6644 TTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACAAAAATCGCTACACCTCATGCCAG- 6586 Query 15718 TTTCA--TGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAGCCGGTATTTGAGCA 15775 | || ||||| || ||| |||| |||| | ||| | | ||| || | || Sbjct 6585 -TCCAGCTGGTCCGATCCGATTAACCATTATTCGGACACCGTAGAGGGCGTTTACGATTC 6527 Query 15776 GGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAG 15835 | ||||| ||| |||||| | | | || | || || ||||||||||| Sbjct 6526 CGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAGCCTCACGGCTATCGGCTGCACGTC 6467 Query 15836 GCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGT 15895 ||| ||||| | || |||||||||| |||||| ||||| ||| ||| | Sbjct 6466 ACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCATTCTCTCCAATGCCAAAGATGGTAC 6407 Query 15896 TGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCT-ACATCATCGCCG 15954 ||||| || | ||||| ||||| || | ||||| | || ||| | ||||||| | Sbjct 6406 GGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC-TATCCCCGCTGAAATCATCGGTG 6348 Query 15955 TGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGG-- 16012 |||| ||| | | ||| ||| | |||||||||||||| | ||||| || Sbjct 6347 TGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCGGCCGCATCAGTTCTGTTAATGGCC 6288 Query 16013 -TCGCGTTATCAAACTTGACCGC 16034 |||||| | ||| |||||| Sbjct 6287 TGCGCGTT---ACACTCGACCGC 6268 Score = 93.3 bits (102), Expect = 1e-14 Identities = 392/608 (64%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 5652 GGCTGAGGTAAAGGGGATCAGCGGCAGAGAGCAGCTTTCAGGCGGCGCGGAAACGGCGCA 5711 |||||| || || || |||||| || | |||| | | |||| |||| | | Sbjct 16493 GGCTGAAGTTAAAGGCATCAGCAGCCGGGAGCTCATGACCTCGGGCGTTGAAAAACCAGA 16434 Query 5712 GGCAACGATTCGCGTCTGGATGCGCTTCAGGTCAGAGCTGAATGCCTCTTCTCGTCTGGA 5771 ||||||||| ||||||||||| || ||||| | || | | || | || || ||| | Sbjct 16433 GGCAACGATACGCGTCTGGATTCGTTTCAGAACTGATGTAACAGCTGCCTCCCGGCTGAA 16374 Query 5772 AGTGC-TCAGCGGCCCGTATAAAGGTCAGGTGCTAAATATCATCGGTCCTCCTGTAGCAA 5830 | ||| | | || |||| ||| || ||| || || | | || ||| || | Sbjct 16373 A-TGCATTACTGGTCCGTTTAAGGGAATGGTTCTTGATGTGACAGGAGAGCCTATACCGG 16315 Query 5831 ATGCGACTGGCACTCGCCTGGAAATTCTTTGCAAAACGGGAGCTGAAAA-ATGATTGAGA 5889 | || | | |||| || |||||||| || || ||| | |||| | ||||| || Sbjct 16314 ACGCCAGAGCGACTCAGCTCGAAATTCTCTGTAAGCAGGGGG-TGAAGACATGATAACGA 16256 Query 5890 CGAGCCTCGATTTTTCCGGGTTAAATGACATCGCAAAGGATCTGGAGGCGCTTAGCCGCG 5949 | ||||||||||| || || || ||| | | ||| || ||| || ||| | Sbjct 16255 CCAGCCTCGATTTCTCTGGTTTGTCTGATTTATCCCGGGACCTTGAGATCCTCAGCAAAG 16196 Query 5950 CTGAAAACAATAAGGTTCTTCGTGATGCCACCCGCGCCGGCGCGGAAGTGCTTAAGGAAG 6009 | || | || ||||||| | ||| | | ||||| || | ||| ||||||||| Sbjct 16195 CAGAGAGCAGGGCGGTTCTTAATCGTGCGGTCAGGGCCGGAGCCGGTGTGGTTAAGGAAG 16136 Query 6010 AAGTGATCGCCCGCGCGCCGGTGCGTACCGGGAAACTGaaaaaaaaCGTGGTGGTGGTGA 6069 || | ||| | || || | | ||| || || || || | || ||| | Sbjct 16135 AAATTATCAACACTGCACCAGAAAAGAGCGGAAAGCTTAAGCGGAATATCGTTGTGCTCT 16076 Query 6070 CCCAAAAAAGC-CGCCGTCGCGGGGAAATTTCTTCCGGCGTCCATATTCGTGGTGTTAAC 6128 || ||| | ||||| || || || || ||||| ||||||||||| || Sbjct 16075 CCGGTAAAGGTGCGCCGG-GCACGGCAACGGCT---GGCGTGCATATTCGTGGCAGAAAT 16020 Query 6129 CCGCGC-ACCGGGAACAGCGATAACACGATGAAGGCTAATAACCCGAGAAACGCCTTTTA 6187 || ||| | ||| ||||| || | ||||||||| | ||| |||| || |||||||| Sbjct 16019 CC-CGCTAACGGCAACAGTGACACCACGATGAAAACGAATTCTCCGAACAATGCCTTTTA 15961 Query 6188 CTGGCGATTCGTTGAGCTGGGTACCGCGAACATGCCTGCACATCCGTTTGTGCGACCCGC 6247 |||||| || | ||| |||||| | || |||||||| ||||| ||||| || || || Sbjct 15960 CTGGCGTTTTCTGGAGGAGGGTACATCAAAGATGCCTGCTCATCCTTTTGTCCGGCCAGC 15901 Query 6248 TTACGATA 6255 | ||||| Sbjct 15900 ATTCGATA 15893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117184736428294