Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq1 583 2e-161 seq2 93.3 8e-14 seq4 89.7 9e-13 >seq1 Length=970878 Score = 583 bits (646), Expect = 2e-161 Identities = 813/1134 (72%), Gaps = 14/1134 (1%) Strand=Plus/Plus Query 207820 ATTACAGTTGGAAATCACCGAACTCGGCAGTATCTACTTCTGAGTCGATCTGACCTACCA 207879 |||| || ||||| || |||| ||| || ||||||| || ||||||||||| |||| Sbjct 155802 ATTAAAGCTGGAAGTCGTCGAAGTCGTTAGCGCCTACTTCAGAATCGATCTGACCCACCA 155861 Query 207880 GGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTGTCAGTTACCAGCCATG 207939 | || || ||||| |||||||| || ||||||||||||||||||| |||||||| | Sbjct 155862 GATAGGAGCTCACTTCCACTTCCTGCGGCGCAACCTGAACGTTGTCAGAGACCAGCCAGG 155921 Query 207940 AGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTGAATGGAAGATCCAAACCGATCGCCT 207999 ||||||||||||| |||||||| ||| || | ||| || | ||| | |||| |||| Sbjct 155922 AGTTAATCCATGGGATTGGGTTTGAGCGCGTCTGGAACGGCAAATCAAGGCCGACAGCCT 155981 Query 208000 GCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATCTCTTTGTTCAGACCGA 208059 |||||||||| ||||| |||||||||| ||||||||||| || ||||||||||| |||| Sbjct 155982 GCATACGGATATTGGTGATGTACTCAATGTACTGGCAGAGAATATCTTTGTTCAGGCCGA 156041 Query 208060 TCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCTTGCTGAGCGGTAGCAA 208119 ||||||| || | |||||||||| || ||||||||||| || ||| | || | Sbjct 156042 TCATTGAGCCGCCGCTGAACAGATATTCTGCCCACTCTTTCTCCTGCAGTGCTGCTTTCT 156101 Query 208120 CGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCAGCCATCTCTGGATCAT 208179 |||| ||| | |||||| ||| |||||||| |||||||| |||||| ||||| | Sbjct 156102 TAAACAGCTCGAAGCACTCTTCACGGCACTCTGCCGCAATCTCTTTCATCTCCGGATCGT 156161 Query 208180 CTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACCATGTGAAGTGCTTCGT 208239 ||| ||| | || |||||| | |||||||| || || || ||| || ||||| | Sbjct 156162 CTTCACCGCTGCGCAGCAGGTTCAGCATGTGCTGGGTGCCGGTCAGGTGCAGCGCTTCAT 156221 Query 208240 CACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGCTTACGTTCGGCAAATG 208299 | || || |||| |||||||| || || || ||||||||||||| ||| || || || | Sbjct 156222 CGCGGGCAATCAGCTTGATGATTTTGGCATTGCCTTCCATCAGCTCACGCTCAGCGAACG 156281 Query 208300 CGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGTGAGTTGATAGATTGCA 208359 |||| || || |||||| || |||||||| || ||||| || | |||| | | || Sbjct 156282 CGAAGGAACAGGCGAAGCTGACATAGAAACGGATCGCTTCCAGCGCATTGA-CGCT--CA 156338 Query 208360 -GAGCCAGGTACAGTGCT--TTCTTAATAGCACGAAGATTAACATTAACCTTCTCGCCAT 208416 || ||| || || ||| ||||| | || || || | || |||| | ||| | Sbjct 156339 TCAGGCAGATATAGAGCTGCTTCTTCAGGGCGCGCAGGCTGACGACAACCGGTTTGCCGT 156398 Query 208417 TGAC----TACGTGGTCACCCAGACCCAGGTAATAGTACTGGTTGATCAAGGCAATCAGT 208472 |||| | |||| || |||||| | || | | |||| ||| ||||||| Sbjct 156399 TGACCTGATGCGTG----CCTTCACCCAGCTGATGCCAGTAGTTGGTCATCTCAATCAGA 156454 Query 208473 TTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTTGATATGTTCGTTATCTACAACG 208532 | |||||| || | || | | |||||| | || || || || || | Sbjct 156455 TCGTCGTAATAGCGTGAGATATCCTGAGCACGCGCCAGAATCTGCTCATTGGTAACGATA 156514 Query 208533 TCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCTACGA 208592 || ||||| || | | ||||||||||| ||||| | ||||||||| || || ||| Sbjct 156515 TCGTCAAAAACTACCGCCGGATCGTTAACAATGTTACGGATGATGTGGGTGTAAGAACGG 156574 Query 208593 CTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGAG 208652 ||| || || || ||||| ||||||| ||| ||| |||||||| || || || ||| Sbjct 156575 GAGTGAATCGTCTCTGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCAGGAATCGAG 156634 Query 208653 CAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCAGTAGTGTCTGA 208712 | ||| || | || ||||| || | |||||||| || || ||||| || |||||| Sbjct 156635 ATCAGCGGCAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATCGAATCCAGCAGCGTCTGA 156694 Query 208713 TATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATGTAGTCAATA 208772 || |||||||| ||||| || | ||||| || ||||| || | ||| ||| || || Sbjct 156695 TACTTCAGGTTGCTGATAAAGATATGTTTTTCATGATCCGGCAGCGCCTGGTAATCGATG 156754 Query 208773 CGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCAATG 208832 || || || || || || || ||||| |||||||||||||| || || || || || || Sbjct 156755 CGATCGCGTGAAACGTCGACCTCTTCCGGACGCCAGAAGAAGGAGAGCTGCTTTTCGATC 156814 Query 208833 AGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGACGTTTTGACCC 208892 || || |||||||| ||||| || || |||||| | || | ||||| ||| ||||| Sbjct 156815 AGCTTTTCAAAGATGTCATATTTTTGCTGGTCGAAGCGCGCCACGTTTACGGACTGACCG 156874 Query 208893 AGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAAAGTTGAGTAA 208946 | ||||| | |||| | ||||| |||||||| || |||||| |||||| Sbjct 156875 AAAAACATCGGCTCTTTCAGCTGATCATTTTTGTTCTGTGAGAAAGTGGAGTAA 156928 Score = 105 bits (116), Expect = 1e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 16819 TCTAATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGT 16878 |||||| |||| | |||| || |||||||| ||||||||||||||||||||||||||| Sbjct 479390 TCTAATCTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGT 479449 Query 16879 TCTACCGACTGAACTACA 16896 |||||||||||||||||| Sbjct 479450 TCTACCGACTGAACTACA 479467 Score = 100 bits (110), Expect = 5e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 16819 TCTAATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGT 16878 || ||| |||| | |||| || |||||||| ||||||||||||||||||||||||||| Sbjct 378708 TCAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGT 378767 Query 16879 TCTACCGACTGAACTACA 16896 |||||||||||||||||| Sbjct 378768 TCTACCGACTGAACTACA 378785 Score = 98.7 bits (108), Expect = 2e-15 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 16835 TGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894 |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 403665 TGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 403724 Query 16895 CA 16896 || Sbjct 403725 CA 403726 >seq2 Length=722220 Score = 93.3 bits (102), Expect = 8e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 16120 ATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATC 16179 |||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct 220889 ATGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATC 220830 Query 16180 C-ACTGAGCTAAGAGCGC 16196 | ||||||||||| |||| Sbjct 220829 CAACTGAGCTAAGGGCGC 220812 >seq4 Length=447486 Score = 89.7 bits (98), Expect = 9e-13 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 16034 AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCT 16093 ||||| |||||||||| || | |||||| ||||||||||||||||||||| |||||| Sbjct 299306 AAATT-TGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCT 299248 Query 16094 CTAACCGTCTGAGCTACGGGGCC 16116 |||||| |||||||| |||||| Sbjct 299247 CTAACC-ACTGAGCTAAGGGGCC 299226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911021865497080