Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq1 242 4e-59 >seq1 Length=970878 Score = 242 bits (268), Expect = 4e-59 Identities = 311/426 (73%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 118117 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118176 ||| |||||||| || | || |||||| | |||||||||||||| |||||||| || Sbjct 156511 GATATCGTCAAAAACTACCGCCGGATCGTTAACAATGTTACGGATGATGTGGGTGTAAGA 156570 Query 118177 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGTG-- 118234 || ||||| || ||||| ||||||||| || || | ||| |||||||| || | Sbjct 156571 ACGGGAGTGAATCGTCTCTGAGAACGCCCAGGTTTCAATCCAGGTTTCCAG--TTCAGGA 156628 Query 118235 -TCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAG 118293 ||| | | | ||| ||||| | | ||||| | |||||||| | |||||||| || Sbjct 156629 ATCG-AGATCAGCGGCAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATCGAATCCAGCAG 156687 Query 118294 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 118353 |||| ||||||||||||||||| ||||| || || || ||||||||||| | ||| Sbjct 156688 CGTCTGATACTTCAGGTTGCTGATAAAGATATGTTTTTCATGATCCGGCAGCGCCTGGTA 156747 Query 118354 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 118413 ||||| || || || | |||| || |||||||||||||||||||| | || ||||| Sbjct 156748 ATCGATGCGATCGCGTGAAACGTCGACCTCTTCCGGACGCCAGAAGAAGGAGAGCTGCTT 156807 Query 118414 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 118473 ||||||||||| || || || | | ||| |||||||| |||| | ||||| | Sbjct 156808 TTCGATCAGCTTTTCAAAGATGTCATATTTTTGCTGGTCGAAGCGCGCCACGTTTACGGA 156867 Query 118474 CTCGCCGAGGAACATCGGCTGAGTCAGGAAATCGAATTTGTTCTGGTTGAAAGTGCTGTA 118533 || |||| |||||||||| |||| ||| ||||||||| ||||||| ||| Sbjct 156868 CTGACCGAAAAACATCGGCTCTTTCAGCTGATCATTTTTGTTCTGTGAGAAAGTGGAGTA 156927 Query 118534 AGACAT 118539 || ||| Sbjct 156928 AGCCAT 156933 Score = 221 bits (244), Expect = 1e-52 Identities = 867/1334 (65%), Gaps = 72/1334 (5%) Strand=Plus/Plus Query 119159 CGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCATC 119218 || || ||||||| ||| || |||| || | |||||| || || || | |||||| Sbjct 157376 CGCGGAGGCTCAATACCGTTGGTGGCATTGGAGATCTGCGACGAGGTTTCAGACGGCATC 157435 Query 119219 ATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATCGCGATATCGACACGCAGCTTTTCC 119278 | || ||||| || ||||| |||||||| || | || || ||||||| ||||| Sbjct 157436 AGCGCAGACAGGGTCGAGTTGCGCAGGCCGTGCGTTTTAATCTCTTCACGCAGGCTTTCC 157495 Query 119279 CAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATCCACCTCTTTTTTGTAACGGTCGATC 119338 ||||| | | ||| | || || || |||| ||||| ||||| |||||| Sbjct 157496 CAGTCGAGATGCAGCGGTTCGTTGCTGATCGCGTCCAGATCTTTCTTGTAGGTGTCGATA 157555 Query 119339 GGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTTTT 119398 |||||||||||||| | || || || || | ||| || || | ||||| Sbjct 157556 GGCAGAATGCCCTGCGCATAGGTGGTTTCATTGAACCACGGGCAGGCACCTTGCTCTTTC 157615 Query 119399 GCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAAC- 119457 ||||| ||| || |||| ||| ||||||||||| | |||||| || || || | Sbjct 157616 GCCAGCTCATTTGAGGCTTTCAGCAGGTAATACTGAATCGCTTCAA--AGGTCTTGTGCG 157673 Query 119458 --AG--CGTTAGCTGCACGAGGGTCGCTGTACTTCATCCCGCGCTTCGCCAGGTAGTACG 119513 || | || || | | ||| ||| || || |||||||||| ||||| | Sbjct 157674 TCAGGCCATTGGCGCTGCCA---TCGGAGTAGCGCACACCATGCTTCGCCAGATAGTAGG 157730 Query 119514 CGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAGCTTGGT-CTTCTCTG--CCGCCA 119570 || |||| | ||| || ||||| ||||| || | | | | | ||| | ||| Sbjct 157731 CGTAGTTGATGACGCCGATACCCAGAGTACGACGACCCATCGCGCCACGCTGGGCAGCCG 157790 Query 119571 GAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAGAGCACGAAC---CAGTGTACGGA 119627 | | |||||||| ||||||||| ||||| || || ||||| || ||| ||| | Sbjct 157791 GGATCGGGTAGTCCTGATAGTCGAGCAGCGCATCAAGCGCACGTACGGCCAGGGTA--GC 157848 Query 119628 CAGGCTCACGCATGTCTTCCAGCTTCTCGATCTTGCCAAGGTTAATGGCAGACAGAGTAC 119687 ||| ||| || || || || | ||||| ||| ||||| | ||||| || |||| Sbjct 157849 CAG-CTCTTCCAGATCGTCGAGGCTTTCGATGGCGCCGAGGTTGAACGCAGAGAGCGTAC 157907 Query 119688 ACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTAATGTCGTTGATCGGATGCGTCGGCA 119747 ||||||| | ||| || || ||| ||||||| || | | ||| | |||||||| Sbjct 157908 ACAGGGCAATCTCACC---GTTTTCG---TCGTTAACATCTTCCAGCGGTTTCGTCGGCA 157961 Query 119748 GCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGGGCCTGTTTAGGGTCAAACGGGC 119807 | ||||| |||| || ||||| ||||| ||||| || | ||||||||||||| Sbjct 157962 GGGCGATTTCCAGGCAGAGGTTAGACTGGCGAACCGGCGCAATGCTCGGGTCAAACGGGC 158021 Query 119808 TGTTGGTATTACAGTGGTCAACGTGCTGAACATAAATACGACCAGTTTGTGAACGCTCCT 119867 ||| ||| || ||||| || |||| ||||| || ||||| || || | || |||| Sbjct 158022 TGTGGGTGTTGCAGTGATCGACGTTCTGAATGTAGATACGGCCGGTAGAGGCGCGTTCCT 158081 Query 119868 GCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATAGACTTCTTCGCCACGGAAG----GA 119923 || | | ||||| || |||| | | || ||| |||| | || Sbjct 158082 GCATCATCAGTGAGAAGAGATCGACCGCTTTAACACGCTGCTT----GCGGATGCTCTGA 158137 Query 119924 T-CTGCTTCCAGTTCCTCGTAAAGCTGTTGGAATTTCTCCTGATCAGAGAAGAAATATTC 119982 | ||||| | || | || || | | || | ||||||| | |||||| || Sbjct 158138 TCCTGCTCATATTTGGT-ATAGAGGCGCTCAAACTCATCCTGATTGGCGAAGAATGCGTC 158196 Query 119983 GTACAGCTTACCGCCAGCCACGT---TCGGATGGAACAACGTGATGTTCTTGCCCTGCTG 120039 ||||| ||||| ||||| ||| ||||| ||||| | | ||| | | | Sbjct 158197 ATACAG------GCCAGGCACGTCAGACGGGCTGAACAGGGTGATATCTTCGCCTTTCAG 158250 Query 120040 GAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGTAGTCCACATGGCGAGCACGAGT 120099 ||||| ||| | ||||||||||| ||| | || ||||||| || || | || | Sbjct 158251 CAGGCGCTGATACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTT 158310 Query 120100 GCTCTCGGTGCCACGGTTGTTCTTCAGAACGATCAGGCTCTCAAAATCCCAGTGCCACAT 120159 || || ||||||||||||||||| || | |||||| || | ||| |||||||| Sbjct 158311 GCCTTCAACACCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACAT 158370 Query 120160 CGGGTAGAAATAGTTAGC--CGATGCCTTACGGACGCCGCCCTGAG---AGG--TCCACC 120212 ||||||||| | || || ||| ||| ||||||||||||| ||| | |||| Sbjct 158371 CGGGTAGAACAGCGTGGCTGCGCCGCC--ACGAACGCCGCCCTGAGAACAGGACTTCACC 158428 Query 120213 CAAGAGACTCTTGGTACATGC--GGACAATCGGCACGGTGCCTGCGTGTTTAACCTCACC 120270 | | ||| | | |||| | | || ||| | ||| | || | ||||| Sbjct 158429 ---GCG-GTCT--GGAAATGCTTGTAGAA-CGGGATACAGCCGGTATGGAACGCTTCACC 158481 Query 120271 ACCACGAAT--GGCAGAATCCTGACCACGAATCATGCCGAAGTTCAGGCCGATCCCGGCT 120328 || ||||| ||| | || | |||| || ||| ||| | ||||| ||||| Sbjct 158482 GCCGCGAATCGGGCTG--CCCAGCGCACGGATACGACCGGCGTTGATACCGATGCCGGCA 158539 Query 120329 CGTTGAGCCGCATATTT-AC-CCTGCGC-CGTGTTGGCGTTAAAGATCTGGTCGATATTA 120385 || |||| ||||||| || ||||| | | ||||||| ||| ||| | | Sbjct 158540 CGCTGAGAGACATATTTCACAATTGCGCTGGAGGTGGCGTT---GATGGAGTCCAGGCTG 158596 Query 120386 TCACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTCGGGGTACGAACACCCGCC 120445 || || |||| ||||| || || ||||| |||||||| || ||||| || || || | | Sbjct 158597 TCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACGTGTTGGGGTGCGTACGCCAGAC 158656 Query 120446 ATGATCGGGGTCGG 120459 ||||| || ||||| Sbjct 158657 ATGATTGGCGTCGG 158670 Score = 161 bits (178), Expect = 9e-35 Identities = 292/419 (70%), Gaps = 15/419 (4%) Strand=Plus/Plus Query 117559 GTTGATCCAAGGGATTGGGTTCTTGGTCGGTTTCCCGATCAGTTCACCAAGGCCAACCGC 117618 ||| ||||| ||||||||||| | || || || | | | ||||||| || || Sbjct 155923 GTTAATCCATGGGATTGGGTTTGAGCGCG---TCTGGAACGGCAAATCAAGGCCGACAGC 155979 Query 117619 CCGCATACGTTGATCTGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTGTTCAGACC 117678 | ||||||| || |||||||| || ||||| | || ||| |||||||||| || Sbjct 155980 CTGCATACGGATATTGGTGATGTACTCAATGTACTGGCAGAGAATATCTTTGTTCAGGCC 156039 Query 117679 GATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCACCGATGCGT 117737 |||||| || ||| | ||||||| | |||||| | ||||||||||||| | ||| | Sbjct 156040 GATCATTGAGCCGCCGCTGAACAGATATTCTGCCC-ACTCTTTCTCCTGCAGTGCTGCTT 156098 Query 117738 CGATAAAGCCCTGTCGT-GC-CTCTTCGTAGCAATCCTCTGCCACACGAGCAAACAGATC 117795 |||| || || || |||||| ||| ||||||| || | || || Sbjct 156099 TCTTAAACAGCT--CGAAGCACTCTTCACGGCA---CTCTGCCGCAATCTCTTTCATCTC 156153 Query 117796 ---ACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTGCCGGACAAATGCAA 117852 | | || | |||| | ||| |||||||| | ||| ||||||| || |||| Sbjct 156154 CGGATCGTCTTCACCGCTGCGCAGCAGGTTCAGCATGTGCTGGGTGCCGGTCAGGTGCAG 156213 Query 117853 GGCTTCATCACGGGCAATCAGTTCAATAATGTTGGTGTTGCCCAGCATTACCCCGCGCTC 117912 |||||||| ||||||||||| | || || |||| ||||| ||| | | | ||||| Sbjct 156214 CGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATTGCCTTCCATCAGCTCACGCTC 156273 Query 117913 GCCGAACGCAAATGAGCAGGCGAAGCTCACGTAGAAGCGGATCGCTTCCAGTGCGTTGA 117971 ||||||| || || ||||||||||| || ||||| |||||||||||||| || |||| Sbjct 156274 AGCGAACGCGAAGGAACAGGCGAAGCTGACATAGAAACGGATCGCTTCCAGCGCATTGA 156332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477507581400920