Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq1 324 4e-84 >seq1 Length=970878 Score = 324 bits (358), Expect = 4e-84 Identities = 656/971 (68%), Gaps = 2/971 (0%) Strand=Plus/Plus Query 1487 AGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCC 1546 ||| || | ||||||||| |||||||| | || |||||||| || || | || || || Sbjct 786016 AGGACGATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCCAGCACGCCAATCCC 786075 Query 1547 TATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAAC 1606 || | ||||||||||| || || || || ||||| |||| ||| |||||||| || || Sbjct 786076 AATAAGCTGAACGCCACCAAGAAACAGCACGGAAACCAGAATAGAGGGGTAGCCTGGCAC 786135 Query 1607 ATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACC 1666 || ||||| | || ||||| | |||||||| || || || || | | Sbjct 786136 CGGGTTACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATATAGAAAAGCTAGCGA 786195 Query 1667 TGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTAT 1726 || | | || || | || | ||| ||||| || |||| || ||||| || || | Sbjct 786196 GGCCACCAGAAAACCCAGATATGACCAGATGCGAAGTGGAACCGTAGAGAATGAGGTCAG 786255 Query 1727 TCCTTCCAGCGCCAGATTCCATAATTTCCAGCCATTGAATTTTGAATCGCCGGCAACACG 1786 ||| |||||||| |||||||| | |||||||| |||||| | ||| || | || Sbjct 786256 TCCCTCCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACTGTGGCCCGCGATCCG 786315 Query 1787 TTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTT 1846 || | ||| |||||| || | ||| || |||||||| |||||||| || | ||||| Sbjct 786316 CTCAGTACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCAACTCAGAATCCCCTT 786375 Query 1847 CATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAA 1906 |||||| | || || |||| | || || ||||||||||| |||| ||| | Sbjct 786376 CATAAAGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAACTTCACGCGACATCAG 786435 Query 1907 CCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATA 1966 ||| || || || ||||| ||||| || | |||| |||||| | || ||||| || || Sbjct 786436 CCGGAAATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCTGTTATGCAGTTTGTA 786495 Query 1967 AAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCGCTTAGC 2026 |||||| || || || || || | ||||| | | ||| ||||| || Sbjct 786496 AAACCAGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCTGTCCATCCGCTTGGC 786555 Query 2027 CAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGGGGGATAACTTCTATCGG 2086 || || ||||| || || ||| ||||||| | || | | |||||||| || || Sbjct 786556 AAGAACAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGGGATAACAGTGATGGG 786615 Query 2087 ATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAGACCCGC 2146 ||||||||||| |||||||| || || || ||||| |||||||| || || || || Sbjct 786616 GTCCTGTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGCGGCTTCCAGGCCGGC 786675 Query 2147 GAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATC 2206 || || || ||||| || ||||| || || ||||||| || || || |||||||| Sbjct 786676 AAACAGCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCTAAGTACCAGCGGATC 786735 Query 2207 AGATGCAGCT-ATTTTGTTAATTATTGATTCAGTCGCATCTTTGCTTCCGTCGTTGATGA 2265 | | || | || | |||| | | | || |||||| |||| || || | | | Sbjct 786736 -GCTCTGACTCAGTTGGGTAATCAGCGCATGCGTTGCATCTGTGCTGCCATCATCAACAA 786794 Query 2266 AAACAATCTCAACTTCATACGGTTTTAACTCTTCAAACTCGCGAACCGTTTTATAGAAAA 2325 ||||||||||||| | | | | | | ||||| | | | |||| | ||| |||| Sbjct 786795 AAACAATCTCAACCTGCCAGGCTGCCAGCGCTTCATATTTTCTGACCGCGTCATAAAAAA 786854 Query 2326 TAGGTATCGTGGCTTCTTCATTGAAGACCGGAACGACTAACGAGATTTTCATTTCGCATC 2385 ||| || | |||||||| || ||||| || || | |||||||||||| | | Sbjct 786855 GAGGGATGACCTCCTCTTCATTAAATACCGGTACCACCAGAGAGATTTTCATTATTCTCC 786914 Query 2386 CCTAAAGACAATGAACTTTGAATAAATGAATCCGCATATCAGGCTGATAGCTGAAAAGGT 2445 |||| || || || ||| ||| || || || ||| |||||||| || |||| Sbjct 786915 TTTAAATACGATAAAGCGGGAAAAAAGAAAGCCACACGCCAGACTGATAGCCGATGAGGT 786974 Query 2446 GACAAGAGTAA 2456 || || |||| Sbjct 786975 GATCAGCGTAA 786985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128278297338020