Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq9 199 1e-46 seq174 118 3e-22 >seq9 Length=205880 Score = 199 bits (220), Expect = 1e-46 Identities = 339/476 (71%), Gaps = 19/476 (4%) Strand=Plus/Minus Query 17005 AACCTATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAA 17064 || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 7655 AAACTATGGCACTCACTGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGATTTAA 7596 Query 17065 ACGCCACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACCGCCT 17124 ||||||| ||||| || || ||||||||||| || | || | || || || || | | Sbjct 7595 ACGCCACGCAGGCTGCTATCCGGGCGGGGTATAGTGCAAAGGCCGCGAA-CGTACAGGGT 7537 Query 17125 -CCGAAAACCTGTCAAAACCTGACATCCAAAACAGAATCGCTGAACTCAAGAATA-AGCG 17182 | | ||| | ||||| | || || ||| | || | || ||||| | || |||| Sbjct 7536 GCTCAGAACTTATCAAAGATTAGTATTCAGAACCGTATTTCAGATCTCAA-ATTACAGCG 7478 Query 17183 CAACGAGGACGTGGGTATAAATGCTGCTTATGTGCTCCAGCGCTTAGTTGAGATTGACCA 17242 ||||| | | || ||||||||||||| || | ||| | | ||||||||||| Sbjct 7477 TAACGAACAAATAAACATTGATGCTGCTTATGTTCTTAACCGCCTGATCGAGATTGACCA 7418 Query 17243 GATGGACGTGGCCGACATTCTCAACGATGAC-GGATCGTTAAAGGCTGTTAGCCAGTGGC 17301 |||||||||| |||||| | | |||||| | | | ||| |||| || |||| Sbjct 7417 GATGGACGTGCTCGACATCATGACAGATGACATGCGCATCAAA-CCTGTATCGCAATGGC 7359 Query 17302 CCAGATGCTGGCGTATCACGCTAC---AG-GGCATCGACCTGGCTTCGACTATTCGCA-A 17356 | | ||||| || ||| || || |||| |||||| || | || | | Sbjct 7358 CAGCCTCATGGCG----CCGATACCTGAGCGGATTCGATCTGGCTGAGA-TGTTTGAAGG 7304 Query 17357 CTTTGACGAGGAAACCGA-AGAGACG--ATCCTCAAAAAGATTAAATGGCCGGACAAAGT 17413 | | ||| || ||| | | || ||||| ||||||||||| |||||||||||||| Sbjct 7303 CCGGGGCGAAGAGCGCGAGATGGTCGGTATCCTGAAAAAGATTAAGTGGCCGGACAAAGT 7244 Query 17414 TAAGAACCTGGAACTGCTTGGCAAACACGTAGATGTTCAGGCGTTCCGTGAACAGG 17469 | ||| ||||||||||| ||||||||| | || ||||| ||||| ||||||| Sbjct 7243 CAGGAATCTGGAACTGCTCGGCAAACACATTTCCGTGCAGGCATTCCGCGAACAGG 7188 Score = 80.6 bits (88), Expect = 7e-11 Identities = 135/193 (70%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 15647 CGGTTGCAGCTCAACGCCACCTGTGAGCGAGTGCGTAACGC--CACCGGCGCCACCGGCG 15704 ||| || ||||| ||| |||||||| ||| || || || ||||||| || | Sbjct 8962 CGGCTGTAGCTCCACGTCACCTGTG--CGA---CGCAATGCGGCACCGGCAATGCCAGTT 8908 Query 15705 GCGCTAATGCAACCGCCCCCCGACTTGATGACGCCGCTCAACGGGATTATTTTTCCCTTA 15764 | | ||||| || | |||||||| | |||||||||| ||||||||||| |||||| Sbjct 8907 CGGATGATGCAGCCAGCGCCCGACTTACTAACGCCGCTCAGCGGGATTATTTCACCCTTA 8848 Query 15765 GAAACAGGATCGAAGTCACCGAAAAGCAAATAATAGGTTTACAACAGTACATTATGAAAC 15824 || | | | |||| || || |||||||||| || | ||||| |||| | | | Sbjct 8847 GAGAGCGAACCGAAATCGTCGGAAAGCAAATAGCGGGCCTGCAACATAACATCAGAGAGC 8788 Query 15825 AATGTTTGAGATA 15837 | |||||||| || Sbjct 8787 AGTGTTTGAGGTA 8775 >seq174 Length=42168 Score = 118 bits (130), Expect = 3e-22 Identities = 123/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 15681 GTAACGCCACCGGCGCCACCGGCGGCGCTAATGCAACCGCCCCCCGACTTGATGACGCCG 15740 |||||||| ||||| ||||||||| | | ||||| || | |||||||| |||||||| Sbjct 26901 GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCG 26842 Query 15741 CTCAACGGGATTATTTTTCCCTTAGAAACAGGATCGAAGTCACCGAAAAGCAAATAATAG 15800 |||||||||||||||| |||| ||| | | ||||| || ||| |||||||||| | Sbjct 26841 CTCAACGGGATTATTTCACCCTCAGAGAGCGAATCGAGCTCGCCGGAAAGCAAATAGCCG 26782 Query 15801 GTTTACAACAGTACAT-TATGAAACAATGTTTGAGATAG 15838 ||| || || || || |||| | || |||||||| ||| Sbjct 26781 CTTTGCAGCAATATATCTATG-AGCAGTGTTTGAGGTAG 26744 Score = 114 bits (126), Expect = 3e-21 Identities = 590/918 (64%), Gaps = 45/918 (5%) Strand=Plus/Minus Query 33447 AAGCTGCGCTATCCGAACACCGCCTTACTCTACATGGAATTTGATTCGAGCCAGTTTAAC 33506 || |||||||| || || ||||| | || || || || ||||| | || ||||| | | Sbjct 7170 AAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAGGTTGATGCCAGTCAGTTCAGC 7111 Query 33507 GGCTCTATTCCGCAAATCT--CCTGCGAGCCGCGCGGGCGTGTCATTCGCGTTCCTGCGA 33564 || || | | |||| | | ||| |||| ||||| | ||||||| || | | Sbjct 7110 GG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGCGGCTGGTTCGCGTGCCGACAA 7053 Query 33565 ACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCGT 33624 |||||| || | | || || ||| |||| || ||| | || || |||| || | Sbjct 7052 CCTATGATCCTGTTTCACGTAGTTATGCCGGAACGTGGCAGGGTGATTTCAAATACGCCT 6993 Query 33625 GGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTCG 33684 || ||||||||||| ||| | || || ||||||||| | | | || || | | Sbjct 6992 ATACCGATAACCCGGCATGGATTTTCTATGACCTGGTGCTGGATAAAATATTTGGTATGG 6933 Query 33685 GCGAC-CGGCTGGACGCCGATAACGTGGACAAATGGGCGCTCTACCAGGTGGCGCAATAC 33743 | ||| || | || ||| | | ||||| |||| ||| ||| | |||| ||| Sbjct 6932 G-GACGCGTGTCGATGCCACCATGATCGACAAGTGGGAGCTTTACAGTATTTCGCAGTAC 6874 Query 33744 TGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGC 33803 ||||||||||||||| | |||||| ||||| ||| ||||| |||| || || Sbjct 6873 TGCGATCAGATGGTGTCTGACGGCGCAGGCGG-AACG-----GAGCCGCGCTTTACCTGT 6820 Query 33804 AACGTCTACGTGCAGAGCCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCCATC 33863 ||||| | | | ||||| | | || || | || ||| || ||| ||||||| || Sbjct 6819 AACGTGTTCATACAGAGTCAGCAGGATGCGTATACCGTTCTGAAGGACATTGCGGCGATA 6760 Query 33864 TTCCGGGGCATGACTTACTGGGG---TGGCGA--------TCA--GCT--CGTTACGCTG 33908 ||||| ||||| || | |||||| || | ||| ||| ||| ||| | Sbjct 6759 TTCCGTGGCATTACGTTCTGGGGCAACAGCCAGATTTTCGTCAATGCTGACGTGCCGCAG 6700 Query 33909 GCAGAC-ATGCCG----CG-CGATGTTGATTATGTCTA-CACGCGCGCGAATGTGGTTGA 33961 | ||| || || || |||||||||| || || ||||| ||| || || |||| Sbjct 6699 GTTGACTCTGACGGCAACGTTGATGTTGATTTCGTTTACCACGC-CGCAAACGTCATTGA 6641 Query 33962 AGGGCGCTTCACTTACGCCAGCAGCACACTA-AAAGCCCGCTACTCAACCGC--GCTGGT 34018 ||| ||||| || || || ||| ||| ||| |||||| ||| | || || Sbjct 6640 TGGGTTGTTCACCTATGCGGGCGGCA-GCTACAAAAATCGCTAC---ACCTCATGCCAGT 6585 Query 34019 -GAGCTGGTCTGATCCCGATAACCAGTACGCTGACGCGATGGAACCCGTATTCGAGCCGG 34077 |||||||| ||||| |||||| || | ||| | | || ||| | ||| | | Sbjct 6584 CCAGCTGGTCCGATCCGATTAACCATTATTCGGACACCGTAGAGGGCGTTTACGATTCCG 6525 Query 34078 ATCTGGTTAACCGCTACGGCGTTAACCAGCTTGAG-ATAACCGCCATTGGTTGCACCCGG 34136 ||||||| | ||||||||||||| | |||| | || || || || ||||| Sbjct 6524 ATCTGGTACAGCGCTACGGCGTTAGGGA-AATGAGCCTCACGGCTATCGGCTGCACGTCA 6466 Query 34137 CAGAGCGAGGCCAACCGAAAAGGCCGCTGGGGCATCCTGACGAACAACCGTGATCGCATC 34196 ||||||||||| | || || ||||||| ||| || | || | ||| | | Sbjct 6465 CAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCATTCTCTCCAATGCCAAAGATGGTACG 6406 Query 34197 GTGACGTTCGCGGTGGGGCTGGACGGCAACATCCCGCTGCCCGGTTATATCATCGCCGTG 34256 || | |||| || || ||||| || | || || | |||| | | ||||||| ||| Sbjct 6405 GTTTCATTCGGCGTCGGACTGGATGGTTATATTCCTATCCCCGCTGAAATCATCGGTGTG 6346 Query 34257 GCAGATGAAATGCTTTCCGGGCGTGTGATGGGCGGCAGGATCAGCGCCGTGGATGGCCGG 34316 || || | | | |||| || |||||| | ||||| | || |||||| | Sbjct 6345 GCGGACCCATTCCGAAGCGGGAAGCAGAACGGCGGCCGCATCAGTTCTGTTAATGGCCTG 6286 Query 34317 ACGGTGACTCTCGACCGC 34334 || || ||||||||| Sbjct 6285 CGCGTTACACTCGACCGC 6268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127785534609408