Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq13 178 1e-39 seq2 116 4e-21 seq1 84.2 2e-11 >seq13 Length=199142 Score = 178 bits (196), Expect = 1e-39 Identities = 145/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 ||||| || || |||||||| ||||||||||| || ||||| ||||||||||||||||| Sbjct 145503 GGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCAGTTAAA 145444 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| ||||| |||||||||||||| ||||| || || || ||||| || || |||||| Sbjct 145443 CATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGTTTTAAC 145384 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCT 43897 || || || || || |||||||||||||| || | || || ||||| || ||||| Sbjct 145383 TCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAAAGTCT 145328 >seq2 Length=722220 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| ||||| |||||||||||| || ||||||| ||| ||||| | | Sbjct 515225 GGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGATGCGATGGAA 515166 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| || ||||||||||| |||||||| || || |||||||| || || ||||||||| Sbjct 515165 CATCCAGAGAAATATCCGCAACTGACCATTCGCGTTTCCGGTTACGCTGTGCGCTTTAAC 515106 Query 43842 TCTCTGACTCCGGAACAGCAGC 43863 || |||||| || ||||||| Sbjct 515105 TCACTGACTAAAGAGCAGCAGC 515084 >seq1 Length=970878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 132137 GGTGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAA 132194 ||||||| ||| ||||| || ||| || |||| || |||||||| || || || | Sbjct 158481 GGTGAAGCGTTC--CATACCGGCTGTATCCCGTTCTACAAGCATTTCCAGACCGCGGTGA 158424 Query 132195 AATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGC 132254 | || |||||||| || || ||||||| || || || || || || |||||||||| Sbjct 158423 AGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACCCGATGTGGC 158364 Query 132255 ACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTA 132314 | | ||| | || | ||| | || ||||| || ||| || || || | ||||| Sbjct 158363 ATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAGGCAACCGCG 158304 Query 132315 TTCGACATATGGACTACGG 132333 | || || |||||||| || Sbjct 158303 TGCGTCACATGGACTATGG 158285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541134515498320