Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq1 318 7e-82 seq3 181 1e-40 seq13 172 6e-38 seq4 91.5 2e-13 >seq1 Length=970878 Score = 318 bits (352), Expect = 7e-82 Identities = 1089/1667 (65%), Gaps = 84/1667 (5%) Strand=Plus/Minus Query 40684 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 40743 |||||| | || || ||| |||| | || | || ||||| || ||| | || || Sbjct 158706 TTCTATGATGCGATCTCGACGTTTAAAATCTCCCTGCCGACGCCAATCATGTCTGGCGTA 158647 Query 40744 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGT 40803 || || || || ||||||||| | ||||| | ||||| | || || |||| Sbjct 158646 CGCACCCCAACACGTCAGTTCAGCTCCTGTGTGCTGATCGAGTGCGGCGACAGCCTGGAC 158587 Query 40804 TCTCTGAACGCTGTTACGTCC---GCGATCGTGAAGTATATCTCTCAACGTGCTGGTATT 40860 || | ||||| || ||| || || ||||| ||| ||||||| ||||| || || Sbjct 158586 TCCATCAACGCC---ACCTCCAGCGCAATTGTGAAATATGTCTCTCAGCGTGCCGGCATC 158530 Query 40861 GGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTA 40920 ||| |||||||||| | || || || |||| || || || |||||||| | Sbjct 158529 GGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCGTTC 158470 Query 40921 CATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAG 40980 ||||| ||| ||||||||||| || || | ||||| ||||| || |||||||| ||| Sbjct 158469 CATACCGGCTGTATCCCGTTCTACAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTCAG 158410 Query 40981 GGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAA 41040 ||||| |||||||| || ||||| || |||| || ||||| |||||||| ||| | ||| Sbjct 158409 GGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACCCGATGTGGCATCTGGAAATCGAA 158350 Query 41041 AACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGAT 41100 | |||| |||| ||||| || |||||||| ||||||| ||||| | |||||| |||| Sbjct 158349 AGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGGAC 158290 Query 41101 TATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTAATCAATAACGATTACATCACT 41160 ||||| |||||||| ||| | |||||||| |||| | | || ||| | ||||| Sbjct 158289 TATGGTGTACAGCTCAACAAGCTGATGTATCAGCGCCTGCTGAAAGGCGAAGATATCACC 158230 Query 41161 CTGTTCAGCC---CTGACGTTGCGAACGATCGCCTGTATGACGCGTTCTATCAAGCGGAT 41217 |||||||||| |||||| ||| | ||||||||||||| |||| || || || Sbjct 158229 CTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTGTATGACGCATTCT-TC--GCCAAT 158179 Query 41218 CAGACTGAGTTTGAAGAACTGTATACCAGTCTTGAAAAAGACCCAACGGTACGCAAGAAA 41277 ||| ||||||||| || ||||||| ||| | || | | | |||||| | Sbjct 158178 CAGGATGAGTTTGAGCGCCTCTATACCAAATATGAGCAGGATCAGAGCATCCGCAAGCAG 158119 Query 41278 CGCATCAAAGCGGTAGATCTGTTCCAGTTGCTTGTTCAGGAACGCGCACAGACCGGACGC 41337 || | |||||||| ||||| ||| || | | ||||||||||| ||||| || Sbjct 158118 CGTGTTAAAGCGGTCGATCTCTTCTCACTGATGATGCAGGAACGCGCCTCTACCGGCCGT 158059 Query 41338 AACTACATTTTCAACAGTC-ATCAC-GTAA-ACCAGCAGGGTAGTTT--------CTCTG 41386 | ||||||| ||| ||| ||||| | || ||| || | |||| | || Sbjct 158058 ATCTACATTCAGAAC-GTCGATCACTGCAACACCCACA-GCCCGTTTGACCCGAGCATTG 158001 Query 41387 TTCCGGTTCGTATGTCGAACCTGTGCTGTGAAATCGCGATCCCAACTTCACCACTGGA-- 41444 |||||||| ||| ||||| ||| |||||||| | || || ||| ||||| Sbjct 158000 CGCCGGTTCGCCAGTCTAACCTCTGCCTGGAAATCGCCCTGCCGACGAAACCGCTGGAAG 157941 Query 41445 ----TGACGATGATAAACTGGCTGGCGAAATTGGACTGTGTACGCTTATGGCGATCGTTC 41500 | |||| || |||| || || |||| ||||||||||| ||| || | Sbjct 157940 ATGTTAACGACGA-AAAC-----GGTGAGATTGCCCTGTGTACGCTCTCTGCGTTCAACC 157887 Query 41501 TCG-----AT--AATGCCGATATAAGCGAATTCCCAGCCCTTACACGCATCGCAGTACGC 41553 ||| || || ||| | ||| | || || | | | || ||||| Sbjct 157886 TCGGCGCCATCGAAAGCC----TCGACGATCTGGAAGAGCTGGCTACCCTGGCCGTACGT 157831 Query 41554 GCACTGGATAACCTGTTGGATTACCAGAACTACCCTGTTGCAGCGGCTCTG---AAAGCC 41610 || || ||| ||| | || || ||| ||||||| | | || || | | || Sbjct 157830 GCGCTTGATGCGCTGCTCGACTATCAGGACTACCCGATCCCGGCTGCCCAGCGTGGCGCG 157771 Query 41611 AAACAGCGCCGTTCTCTGGGCGTTGGTATCACCAACTATGCATCCTGGCTGGC-AAGCAA 41669 | || ||| ||||||| | || ||| |||||| || | || ||||| ||||| Sbjct 157770 ATGGGTCGTCGTACTCTGGGTATCGGCGTCATCAACTACGCCTACTATCTGGCGAAGCAT 157711 Query 41670 CTATTGCGACTACTCCGAAGCATACGCC---GG--AAACGTTCATGAGTTGATGGAAGCG 41724 |||| ||||||||| | |||| || ||| || || | | |||||| Sbjct 157710 GGTGTGCG-CTACTCCGATGGCAGCGCCAATGGCCTGACGCACAAGACCT--TTGAAGCG 157654 Query 41725 TTTCAATTTAACCTGCTGGTTGCCTCTATGGAACTCGCACAGGAACGTGGTGCATGTGGA 41784 |||| | | |||||||| ||||| | || || || | || | ||||| || Sbjct 157653 ATTCAGTATTACCTGCTGAAAGCCTCAAATGAGCTGGCGAAAGAGCAAGGTGCCTGCCCG 157594 Query 41785 CTGTTCCACGAAACGAAATATGCACAAGGGCTGTTGCCTATTGACTGGTACTGCAAAAAC 41844 |||| | ||||| | ||||| || || | ||||||| ||| ||| ||| | Sbjct 157593 TGGTTCAATGAAACCACCTATGCGCAGGGCATTCTGCCTATCGACACCTACAAGAAAGAT 157534 Query 41845 GTTGATG-AACTGGCAGCG--CCTGTGTATAACTGCGACTGGGAATGGTTACGCGGTGAA 41901 | || | | ||| || || || || || |||||||||| | | || | || Sbjct 157533 CTGGACGCGATCAGCAACGAACCGCTGCAT--CT-CGACTGGGAAAGCCTGCGTGAAGAG 157477 Query 41902 ATTAAAAAACACGGTTTGCGTAACTCAACGCTTTCTGCTTTAATGCCTTGTGAAAGTAGC 41961 ||||||| ||||| |||| ||||| || || ||||| | ||||| | ||||| Sbjct 157476 ATTAAAACGCACGGCCTGCGCAACTCGACCCTGTCTGCGCTGATGCCGTCTGAAACCTCG 157417 Query 41962 TCACAGGTGAGTAACTCAACCAACGGGATTGAACCTCCGCGCGGCCCTGTGAGTGTGAAA 42021 || ||| | || | |||||||| ||||| ||||||||||| | | || | ||| Sbjct 157416 TCGCAGATCTCCAATGCCACCAACGGTATTGAGCCTCCGCGCGGTCACATCAGCATCAAA 157357 Query 42022 TCTTCGAAAGAAGG-TTCATTCAATCAGGTAGTACCAAACCAGAATAATCAGATTGACTT 42080 | || ||||| || || | | |||||| || || | | | || || || Sbjct 157356 GCGTCAAAAGATGGCATCCTGC-GTCAGGTCGTGCCGGAGTATGAGCGTCTGAAAGATCA 157298 Query 42081 CTATGATTATCTCTGGACAATGGCAAAACGTGGAAACAAAGGTTATCTGTCTCATGTAGC 42140 || || || ||| |||| | || ||| | || || ||| | || | Sbjct 157297 GTACGAACTGCTGTGGGAAATGCCGAA------CAACGACGGCTACCTGCAACTGGTGGG 157244 Query 42141 GGTTATGCAGAAGTTTGTTGATCAGGCTATCTCTGCAAACACAAACTATGATCCGGCCAA 42200 | |||||||| || | || ||||| || || | ||||| ||||| |||||| | Sbjct 157243 TCTGATGCAGAAATTCATCGACCAGGCGATTTCGTCCAACACCAACTACGATCCGTCGCG 157184 Query 42201 CTTCCCAGATGGTAAAGTGAAATCTGAAATCA--TCCTTGAAGATCTGCTGTATGCAAAC 42258 |||| | | ||||||||| ||||| || | || ||||||||||| || | Sbjct 157183 CTTCACCAACGGTAAAGTG-CCGATGAAA-CAGCTGCTGAAAGATCTGCTGACGGCGTAT 157126 Query 42259 TATTTCGGCATCAAAACGCTGTACTACCACAACACCCGTGACGGTGC 42305 | |||||| | |||||||| ||||| || ||||||||||||||||| Sbjct 157125 AAGTTCGGCGTGAAAACGCTCTACTATCAAAACACCCGTGACGGTGC 157079 >seq3 Length=630259 Score = 181 bits (200), Expect = 1e-40 Identities = 679/1046 (65%), Gaps = 33/1046 (3%) Strand=Plus/Minus Query 153200 GCCCGTGCATACATCGAATATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGTAAG 153259 ||||| || ||||| ||||| ||||||||||||||| | ||||| || | | || || Sbjct 230075 GCCCGCGCCTACATTGAATACCGCCACGATCGCGATGTCGCCCGCGATCGTCAGAGCCAG 230016 Query 153260 CTGTTCAAAGATATCTCCGGTATGGTGAATCTGTCCAACAAAGAGATCACCAACGAGAAC 153319 | | | || ||| |||| ||| | |||| | | | |||||||| Sbjct 230015 TTACATCACGCCATTCGCGGACTGGTCGATCAGACCAATGCGGCGCTGCTGAACGAGAAT 229956 Query 153320 GCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGGTATCGTAGC 153378 || ||||||||| |||| | || ||| || ||||||||||||||||| || ||||| || Sbjct 229955 GCCAACAAAGACAGCAAAGTGAT-CCCGACGCAGCGCGATCTGCTGGCCGGGATCGTGGC 229897 Query 153379 GAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGCATGATTCTGG 153438 ||||||| ||||| | || || ||||| | | || ||||| || || Sbjct 229896 AAAACACTACGCACAGCAGCAGATCCTGCCGCGCGATGTGGTGCTGGCGCACGAGCGCGG 229837 Query 153439 TGATATCCATTATCATGATCTGGATTACAGCCCGTTC-ACGCCATACACAAACTGCTGTC 153497 || ||||| ||||| ||||| || ||| ||| ||| | | || | |||||| | Sbjct 229836 CGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTC-AACTGCATGC 229778 Query 153498 TGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACATCGAAC 153557 || | ||| ||||||| |||||| | || || ||||| ||||| || || || ||||| | Sbjct 229777 TGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCTGAGATCGAGC 229718 Query 153558 CCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGATTGCCT 153617 | || ||||| |||| || || || | | ||| ||||||| ||| ||| | ||| Sbjct 229717 CGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCGCAGGTCGCCA 229658 Query 153618 CTCACCAGTACGGCGGGACAACCTTTGCTAACG--TTGATAAAGTGCTGGCTCCATATGT 153675 || |||||||| || ||| || | || ||||| |||||||||| || | ||| Sbjct 229657 GCCATATTTACGGCGGCACCACCATT--AACCGTATTGATGAAGTGCTGGCCCCGTTTGT 229600 Query 153676 TCAAATGACATATGATAAGCACTTTAAAGA-TGCCAAAAAGTATCAAATCCCTCGTGATG 153734 | | || |||| ||| | | || ||| | ||| || ||||| | | | Sbjct 229599 TGAGCAGAGCTATGCCCGGCA-TCTGGCGATTGCTGAGCAGTGGCAGATCCCGCAGGCCG 229541 Query 153735 TTCAGTATGCAATAGATAAAACTGAAAAGGATGTTTTCGACGCGTTTCAGTCATATGAAT 153794 |||||||| | || || || || | |||||| |||||||| |||| Sbjct 229540 AGCAGTATGCGCGCCAGCGTACGGAGAAAGAGTGCTACGACGCCTTTCAGTCGCTGGAAT 229481 Query 153795 ACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTGTTACAATTACGTTCG 153854 | || || || |||||||| || || ||||| || || |||||||| || || || | Sbjct 229480 ATGAGGTGAATACCCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACCTTTGGTTTTG 229421 Query 153855 GTACTGGTCAATCCCGA-TG---TGAACGCATGATCCAGAAAGCGATTCTGAAAAACCGT 153910 || |||| | | || || | || |||| ||| | |||||||| ||||| Sbjct 229420 GT-CTGGGGA---CGGACTGGGCGGCCCGGCTGATTCAGCAGTCGATTCTGCTTAACCGG 229365 Query 153911 ATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCGAAACTGGTTATGTTCATG 153970 | ||| ||||||||| | | | || |||| ||||| |||||||| | ||| Sbjct 229364 CTGGCCGGACTGGGTAAAAATCGCAAGACGGCGGTGTTCCCTAAACTGGTGTTCAGCATT 229305 Query 153971 GAAAAAGGAATCAACCTTGATCCAGAGGATCGCAACTATGACATCAAACAACTTGCCCTG 154030 |||| |||||| | | || || || || ||||||||||| || ||| Sbjct 229304 CGCGAAGGCGTCAACCGCCGGGCGGGCGACGTTAATTACGATATCAAACAACTGGCGCTG 229245 Query 154031 GAATGTGCTTCTAAACGCATGTACCCAGATATCATTAGTTCAGCTAACAACCGTGCTA-- 154088 || || || || || ||||| || || ||| | | || | | || | | || Sbjct 229244 GAGTGCGCCAGCAAGCGGATGTATCCCGACATCCTCAATT--ACGATCAGGTG-GTTAAA 229188 Query 154089 -TTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAGCGTGTGG 154147 | || || | |||| | | | || ||||| || || ||||||||| |||| | Sbjct 229187 GTCACCGGCT----CGTT--TAAAACCCCAATGGGCTGCCGTAGTTTCCTTGGCGTTT-- 229136 Query 154148 CATGATGATAACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGTGTGGTGACAATC 154207 |||| || ||||| | | |||| ||| || || || || | || || | | | Sbjct 229135 -ATGAAGAGAACGGCGAGCAGATTCATGAGGGCCGCAACAATATCGGGGTAATCAGCCTG 229077 Query 154208 AACCTCCCGCGTATTGCTCTTGAAGC 154233 ||||| ||||| || || || ||||| Sbjct 229076 AACCTGCCGCGCATCGCACTGGAAGC 229051 >seq13 Length=199142 Score = 172 bits (190), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 50954 ATTCGCAAAACGTGAAGTTGATATTGAATTTCAACCCACTGTTAAA-GTGGAAGGTGGAC 51012 |||||| | |||||||| ||||| | ||| || | | || || |||||||||| Sbjct 145555 ATTCGCTTACCGTGAAGTGCCGGTTGAAAT-CAAACCTCAGGTACGTGTTGAAGGTGGAC 145497 Query 51013 AACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTGAAGCATCCAG 51072 | || | ||||| ||||| ||||||||||||| ||||||||||| || || ||||| | Sbjct 145496 AGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCAGTTAAACATCCTG 145437 Query 51073 AAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTCAATTCACTGA 51132 |||| || || ||| | || ||||| || || |||||||| |||||||| || ||||| | Sbjct 145436 AAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGTTTTAACTCACTCA 145377 Query 51133 CTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGTCT 51181 | ||||| || ||||||||||| || |||| |||||||| || ||||| Sbjct 145376 CGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAAAGTCT 145328 >seq4 Length=447486 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49480 GGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAAG 49539 ||||| |||||| | | ||||||||| || ||||||||||||| ||| |||||||||| Sbjct 299226 GGCCCCTTAGCTCAGT-GGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 299284 Query 49540 TCCAGCAGGGGCCACCAAAT 49559 ||||||||||||||||||| Sbjct 299285 CCCAGCAGGGGCCACCAAAT 299304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570044213741720