Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq174 159 1e-34 seq4 102 3e-17 >seq174 Length=42168 Score = 159 bits (176), Expect = 1e-34 Identities = 234/328 (71%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 29929 ATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAGTCAGTGAGCTGG 29988 ||||||| | || ||||| |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 29989 AGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTG 30048 ||||||| |||| ||||| ||| |||||||| | | ||||||||||| | || |||| Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 30049 ATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTC-GCGCT 30107 |||| | |||| | | ||| | || ||||| | |||| | ||| |||||| || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 30108 GACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGTCCCGTGCGT 30167 | |||| ||||| | || | ||||| ||||||| | ||| |||| | Sbjct 26952 G-CGTTAGTTCTGGTAAATGCGGGCTGCGCCTCAACGCAATCTG-------CCCGAAAGG 26901 Query 30168 GAA-GCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACCGC 30226 || ||| |||||||| || |||||||| ||||| || || ||||||| | ||| |||| Sbjct 26900 TAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGC 26841 Query 30227 TGAACGGGATTATTTCACCCTCAGAGAG 30254 | |||||||||||||||||||||||||| Sbjct 26840 TCAACGGGATTATTTCACCCTCAGAGAG 26813 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 24095 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 24154 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 24155 CCAGCAAGGGCCACCATAT 24173 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193537361299330