Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq9 309 9e-80 seq174 95.1 3e-15 seq2 80.6 8e-11 >seq9 Length=205880 Score = 309 bits (342), Expect = 9e-80 Identities = 744/1107 (67%), Gaps = 28/1107 (3%) Strand=Plus/Plus Query 3606 ACCGCGTTTACCAACTGTGCTTCGTAGCCTAACGTTCCGTTTACCACATGCGTTTTCTGC 3665 || || || |||| |||||| ||||| || | ||||| || ||||| || Sbjct 168532 ACTGCATTCACCAGCTGTGCCTCGTATCCCAGAACACCGTTGACGGTGAAGGTTTTTTGG 168591 Query 3666 GCCACGGCGAACGGGTTCATTCCCCACTGTGCCGCCTGCATGGTCACCGCCAGGCAATCG 3725 || ||||| ||||| ||||| | |||||| |||||||||||||| ||||| || || Sbjct 168592 GCGACGGCAAACGGATTCATACGCCACTGCAGGGCCTGCATGGTCACAGCCAGACAGTCT 168651 Query 3726 GCAGGTTTGCCTTCAAGATGTTTCGGTACAGTCGCTTTGCTTTGTGACATCAACTCCGCG 3785 || | |||||| | ||||| ||| ||||| || |||| | ||| | || || Sbjct 168652 GCGGCTTTGCCCGCGAGATGCGCCGGGACAGTGACTCTGCTGCTGGCCATGATTTCTGCA 168711 Query 3786 AAACGCACCAGTTGATTCATGCCCTCGGGGCTGAAGATTGCCGCAGCAGTGCCTACAGTT 3845 || |||||||||| || || | | ||||||||||| || | |||| ||| | ||| Sbjct 168712 AAGCGCACCAGTTTATCCAGGGCATCGGGGCTGAAAATAGTGGCAGTTGTGTC---AGTG 168768 Query 3846 GCGCCTGGTTGTGATGTGATTGCGATATCATTGCTCATACATACATA-TCCTGTTTACGT 3904 | | || || | || || | | ||| |||| | | || ||||||| | || Sbjct 168769 CTGTCGGGCGCAGAGATCAT--CGGT-TGATTTTGCATA-ACGCCTACTCCTGTTAATGT 168824 Query 3905 GCCCAGTCAGGACGTTTAATAATTTCCACTCCGCCCCATTCATCGTTGATGCGGCATTCG 3964 ||||| | || || | ||| ||||| | |||||||| | || | || ||| || Sbjct 168825 GCCCATGCGGGGCGCTGAATTATTTCTATGCCGCCCCAGTTATTGCCGAGGCGACAGGAA 168884 Query 3965 TGATAGGTATTCAGATCCCGGCGGAACAGAGCGTGCCCGGCATCGACATCCGGCACATCC 4024 || | || ||| ||||| ||||| || ||| || || | || | | | Sbjct 168885 TGGAAAGTGCACAGGTCCCGACGGAAGAGGGCGGATCCCGCGCTCATGTCATTGTCGTGC 168944 Query 4025 AGCTCGAACACGCGTACCGGATACCGACCACAATCAATGCTTTCGCTCACGGCAAGAAAG 4084 ||||| ||||| || |||||||| || ||||| || || ||| || || |||| ||| Sbjct 168945 AGCTCAAACACACGAACCGGATAACGGCCACAGTCGATCGCTTCACTGACCGCAATAAA- 169003 Query 4085 AAAAAACCATGCGGCTGA---CCAGTAACCCTCATTGC-GCCTTCGCGGTACATTGCGTC 4140 || ||| ||||| | ||||| | | || ||| |||| |||||| || | Sbjct 169004 AACGAAC--TGCGGATATGTGCCAGTG-CAGTGATAAAAGCCCTCGCAGTACATGGCTGC 169060 Query 4141 CTGCACGTGGTAGCGGAATTCCTCGATGTGACGTGCAAAACGCTCCATATCTGCAACCTT 4200 ||| |||||||| ||||| | |||||||| || ||||| ||| |||||| ||||| Sbjct 169061 CTGAACGTGGTACCGGAACGCTTCGATGTGGCGGGCAAAGCGCGACATATCACTCACCTT 169120 Query 4201 TTTCACGTCGACGATCACGTTGTGCTCGTTCAGCCATTTGTCTGGACGAATTCGGCACAA 4260 ||||||||||||||| | | | | |||| |||| ||||| || || || || | Sbjct 169121 TTTCACGTCGACGATGAGAGGGCGATTCGTCAGATATTTATCTGGCCGGATGCGACAGAG 169180 Query 4261 CTCACCAGTCTCTTCATCGTTCCAGTACATTGACGCTTCGCAGTAACCAGGTGCTTCCAG 4320 || | |||||| |||| |||||| | || | |||||||| || ||||| || Sbjct 169181 TTCTTCTGTCTCTGCATCTGACCAGTAGAGGGAGGATTCGCAGTGGCCGTCAGCTTCAAG 169240 Query 4321 CATCCAGCGTGCCGCCGGGTGAGCCATTGCGCTATCACGCATCAGCTCCAGTTTCCGCCA 4380 | ||||||| || | || |||||| |||| || | ||| |||| |||||||| | Sbjct 169241 AAAAAAGCGTGCGGCGTGATGCGCCATTACGCTCTCTCTCATGAGCTGAAGTTTCCGGCC 169300 Query 4381 CTGCTCGGCATCAAGTACCGTAAT-CCCCATATCCGCCACATCACGAAGAAATGCCTCTT 4439 ||| || ||||| | ||||| || || || || | ||| |||||||| ||| Sbjct 169301 CTGTTCTGCATCCATGACCGTCATGTTCCGGATGCGTGTC-TCATTCAGAAATGCTGCTT 169359 Query 4440 CGTCAGCTTTACCTTGTTTCGTCCGACGATCGAATTTCGGTGAAACAATGAAGCGTTTGT 4499 |||| |||||||| || || || || | || || | ||||| ||||| || | Sbjct 169360 CGTCTGCTTTACCCTGAGAGGTGCGCCGGTTAAAAGAAGGAGCCACAATAAAGCGCTTAT 169419 Query 4500 CGAACTCTCCAGGCTCCAGAAGCAGACAGTGCAATGCGGTTCCCATATCCAGTGCAGACT 4559 | |||| | ||||||| || |||| ||||||| ||| |||||||||||||||| | Sbjct 169420 CAAACTGTTCAGGCTCAAGCAGCATGCAGTGCAGCGCGCTTCCCATATCCAGTGCGGCTG 169479 Query 4560 TTTTCTCTTCGTCTTCTGGTGC-TGCCTGAACC-CATTTAAGAAGCGCCGGATTCTTGGC 4617 |||| || || | || || || || || | || || ||||| || || Sbjct 169480 TTTTATCCGTATCCACAGGCGCATGTTTGCGCCAGAGGTA--AATGGCCGGGTTAACCGC 169537 Query 4618 AACCATGTCA---AGTTGCGACTTACTCACGCCGTCACCGGCGTGGTAGTCTTCGTTGCT 4674 | |||||| || ||||| ||||| |||||| ||||||||| ||| | || ||||| Sbjct 169538 A---ATGTCATCGAGCTGCGATTTACTGACGCCGGGACCGGCGTGATAGGCCTCATTGCT 169594 Query 4675 GATGTCGAAATAAATTCCCGGTTTCAT 4701 || | | ||| || ||||||||||| Sbjct 169595 GAGGCCTTCATAGATACCCGGTTTCAT 169621 >seq174 Length=42168 Score = 95.1 bits (104), Expect = 3e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 11165 ATGGCTAAATCAGCAGCAGAGCGCAAAGCCGCTCAGAGAGCCAGACAAGCTGCATCTGGT 11224 ||| ||||||| | ||||| ||||||||||| ||| | |||||||| || || | ||| Sbjct 40199 ATGCCTAAATCCCCCGCAGAACGCAAAGCCGCGCAGCGTGCCAGACAGGCCGCTGCCGGT 40258 Query 11225 GTGCGTAAGATGGAGATTGTGCTTGATGCTCAGGAAATTGAAATGCTAGAGCGTAACTGT 11284 | ||| ||||| | | ||| ||| ||||||| | || ||||| | || ||||| Sbjct 40259 GGCAAAAAGCTGGAGCTGGCGCTGGATAGTCAGGAACTGGAGATGCTGGCGCAGAACTGC 40318 Query 11285 GCCACGCGTCGCCCCGGGCGTGCGCCTTACGAATTTGGTGAGTATATAGCGTCACTGATC 11344 ||| | || |||||||| |||| || || || | ||||| |||||| | ||| Sbjct 40319 GCCGCACGCCGCCCCGGTCGTGAACCGTATGAGCTGAACGAGTACATAGCGCTGTTAATC 40378 Query 11345 CGCCAGGATG 11354 || |||||| Sbjct 40379 CGAAAGGATG 40388 >seq2 Length=722220 Score = 80.6 bits (88), Expect = 8e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 14490 ||||||||||||||| |||| || ||||||||||| | |||||| |||||||||||||| Sbjct 220876 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTGAGCTAA 220818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143176370483588