Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq3 154 4e-33 >seq3 Length=630259 Score = 154 bits (170), Expect = 4e-33 Identities = 253/364 (70%), Gaps = 3/364 (1%) Strand=Plus/Minus Query 4157 CATTGCCTCCTTGCTT---GCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGA 4213 |||| || || |||| |||||| ||||| |||||||| ||||||||| || | || Sbjct 51173 CATTACCGCCCTGCTGACGGCCACCCAGCATCTGCATGGTACCACCAACGTTAACCACGA 51114 Query 4214 CTTCGGTAGTGAACCTATCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTC 4273 ||||||| ||| | | ||||| || | |||||||||||||| | || |||| | | Sbjct 51113 CTTCGGTGGTGTAACGCTCCTGGCCACCCTGATCCTGCCATTTACGGGTGCGCAGCTGGC 51054 Query 4274 CTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCC 4333 |||| | ||| |||| || |||||| ||| ||||| | || | ||| |||||||| | Sbjct 51053 CTTCGATATAGACCTGCGATCCTTTTTTCAGGTATTCACCCGCGACTTCAGCCAGTTTGC 50994 Query 4334 CGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCAC 4393 | || ||||| ||||||||||| || ||| || | || || || ||||| || | Sbjct 50993 CAAACAGCACCACACGGTGCCACTCAGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGC 50934 Query 4394 GCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATC 4453 |||| ||| |||||||| | |||| ||| |||| || || ||| ||| | Sbjct 50933 GCCAGCTTTCCGACGTAGCCAGCGTAATGTTGGCAACAGCGCCACCATTTGGCATATAAC 50874 Query 4454 TGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTG 4513 | ||| ||||| || || || || | || ||||| || || ||||| | || | Sbjct 50873 GTACTTCCGGATCCTGACCCAGATTCCCGACAAGAATCACTTTGTTAACGCCACGACTGG 50814 Query 4514 CCAT 4517 |||| Sbjct 50813 CCAT 50810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126736013992624