Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq174 201 4e-47 seq2 104 7e-18 >seq174 Length=42168 Score = 201 bits (222), Expect = 4e-47 Identities = 338/480 (70%), Gaps = 13/480 (3%) Strand=Plus/Minus Query 6081 TTAGCGAATCATCTACCTTTTCATACGCCGGTAGCGGCTACTTCGTGGGCGTCCTGCCTG 6140 ||||||||||||| ||| |||||| | ||||||||||||||||||||||||| Sbjct 35845 TTAGCGAATCATCCCGAACTTCTTACGCCTCGGGAGGCTACTTCGTGGGCGTCCTGCCTG 35786 Query 6141 TTCGCTGTTGATGGGA-TGAATGTACCTCTTGTTACCTTTTGTGTCAA---TTTTTATAT 6196 ||||||| ||||| | ||||||||||| | ||||| || ||||||| | || || Sbjct 35785 TTCGCTGCTGATGTAACTGAATGTACCTTTAGTTACTCTTGGTGTCAACACTGCTTGTA- 35727 Query 6197 TCCATAAGTTACCATTGAGGGCGaaaaaaaaCCCGC--ATCGGCGGGTTGGGAGGATTAT 6254 || | |||||||| | ||||| | |||||| |||| | |||| | || | | ||| Sbjct 35726 -CCTTTAGTTACCACTAAGGGC-ATAAAAAAGCCGCTGCTAAGCGGCTGGGTA--ACTAT 35671 Query 6255 AGCTCTTGGGTTACTTGAACAACCCGACCGATGACTCGCATGTTTCCATTGACTGGGATT 6314 || | || || || |||||||| ||||| | ||| ||||| | || ||||||| Sbjct 35670 AGGTTCTGAGTAACCTGAACAACTTTTCCGATTATTCGACAATTTCCGTCGATTGGGATT 35611 Query 6315 GGGCGAAAATTAGGGTTTAGAGGCATCAAGTATAAGTGTGGCCCATCAGCTACGAGTTTC 6374 || ||| || |||| |||||||| || ||| || | ||| ||| ||||| Sbjct 35610 GGTTTAAACACTGGATTTAAAGGCATCAGATACGCGTGAGGGCTATCCCATACAAGTTTT 35551 Query 6375 TTGATTGTTGCTTCTGAGCTGCCATCAACAATTGCAACGACTATTTTGCCGTAAAGATCA 6434 || | || || || || || |||| || ||||| || || ||||| || |||||| Sbjct 35550 TTCACAGTGGCCTCAGATGATCCGTCAAGTATGGCAACAACAATCTTGCCATACAGATCA 35491 Query 6435 TCGA-CTGAACCATAATGAGGTTCAACAATAACTGTAGATCCCTCTGGAATGGTTGGTCG 6493 |||| ||| || |||| || ||||| ||||| || || || || |||| |||| Sbjct 35490 TCGAGCTG-CCCGTAATTTGGCTCAACGATAACCACGGACCCTTCAGGTATGGATGGTAA 35432 Query 6494 TCCATTGGGGTTTGTCATCGATTCACCGCGTACATCTAAAGCAAATGCGTCATCAGACAC 6553 ||| ||||| ||||| || |||||||| || |||| ||||| | || ||||| || Sbjct 35431 TCCTGACGGGTTAGTCATTGACTCACCGCGGACGATTAAACCAAATACTTCGTCAGAAAC 35372 >seq2 Length=722220 Score = 104 bits (114), Expect = 7e-18 Identities = 115/149 (77%), Gaps = 16/149 (11%) Strand=Plus/Plus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 611126 CAAGGGATTTAAAATCCCTCGGCTGTAAGGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 611185 Query 431 CATTGATTT---------AAAAAGAATTAAA--ACAAGCACTTATG-TGCAATGTCGTAG 478 ||| |||| |||| | |||| | ||||| |||| | ||||||||| Sbjct 611186 CAT--ATTTCTGCCGAAGAAAATCTAATAAAATAAAAGCA-ATATGCAGTAATGTCGTA- 611241 Query 479 ACCGCCGAGAGGCGGtttttttGTGCCTG 507 |||||| | ||||||||||||||||||| Sbjct 611242 ACCGCCCAAGGGCGGTTTTTTTGTGCCTG 611270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154919482262848