Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq3 161 7e-35 seq2 84.2 2e-11 >seq3 Length=630259 Score = 161 bits (178), Expect = 7e-35 Identities = 278/399 (70%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 28561 AGGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGGT 28620 ||| || || ||||| || |||| || ||| ||||| | ||||| ||||||||| Sbjct 228612 AGGCGTTACCGACAAGGGCTACTACACCAACAGCTTCCATCTCGACGTTGAGAAGAAGGT 228553 Query 28621 AAACCCGTATGATAAAATCGACTTTGAAGCGCAATTCATCCCATACAGCTCCGG--TGGT 28678 || || || || ||||||||||||||||||| | |||| | ||| | ||| Sbjct 228552 CAATCCTTACGACAAAATCGACTTTGAAGCGCCCT--ATCCG---CCGCTGGCGAATGGC 228498 Query 28679 C-AT--ATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAAT 28735 || ||||| ||||| |||| ||| ||| ||| ||||| | | || || || || Sbjct 228497 GGATTCATCTGTTACGGCGAATACCCGAATGTGCAGCACAACCTCAAGGCGCTGGAGGAT 228438 Query 28736 GTGTGGGATTACGCCTACACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAA 28795 || ||||||||| |||| | || || || ||||||||||| || || |||||||| Sbjct 228437 GTCTGGGATTACAGCTACGACCGCGTGCCCTATTACGGCACCAATACCCCGATTGATGAG 228378 Query 28796 TGCTATAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCT 28855 ||||| ||||| ||||| || ||||||| ||||| ||| || || ||||| Sbjct 228377 TGCTACGAGTGCGGCTTCAACGGCGAGTTCACCTGTACCAGCCGCGGCTTCACCTGTCCG 228318 Query 28856 AACTGCGGAAACCACGACCCAGAGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTA 28915 || ||||| |||||||| || | | ||| || ||| | || || || ||||| || Sbjct 228317 AATTGCGGCAACCACGATCCGGCGCGCGTCTCCGTTACCCGGCGGGTCTGCGGCTATCTG 228258 Query 28916 GGTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACAG 28954 || | || | | | || || || ||||| ||||||||| Sbjct 228257 GGCAGCCCGGATGCGCGGCCCTTTAATGCCGGTAAACAG 228219 >seq2 Length=722220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 45234 ATGCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCG 45293 ||||||||||||||||| |||||||||||| ||||||||| |||| ||||||| Sbjct 220810 ATGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCG 220869 Query 45294 AATCCTACAGGGCGTGCCATCTTT 45317 |||||| ||||||| |||| ||| Sbjct 220870 AATCCTGTAGGGCGTACCATATTT 220893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356666712600403