Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019530.1 Length=157785 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq4 84.2 2e-11 >seq1 Length=970878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 285/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 52637 TTCACCAGGCGCTCGAACATAACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 52696 |||| |||||||| |||| | ||| | ||| | |||||||| || | || | Sbjct 158246 TTCAGCAGGCGCTGATACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACG 158305 Query 52697 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 52756 ||||| |||| | ||||||||||| || || || | | || | || |||| Sbjct 158306 CGGTTGCCTTCAACACCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGC 158365 Query 52757 CAGATGGG--AACATAGCATGTTGCCGATCCACCACGGATACCGCCTTGAGAGCAAGACT 52814 || || || | | ||| || || | || ||||| | ||||| ||||| || |||| Sbjct 158366 CACATCGGGTAGAACAGCGTG--GCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACT 158423 Query 52815 TCAGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCC 52870 ||| || ||| |||| |||| ||| || | ||| || ||||||| | ||| Sbjct 158424 TCACCGCG---GTCTGGAAATGCTTGTAGAACGGGATACAG-CCGGTATGGAACGCTTCA 158479 Query 52871 CCTTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCA 52930 || || || ||||| || | |||| || || | | || |||||||| ||| Sbjct 158480 CCGCCGCGAATCGGGCTGCCCAGCGCACGGATACGACCGGCGTTGATACCGATGCCGGCA 158539 Query 52931 CGTTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTATCA 52990 || | || ||||| | ||| || | | ||||| || || ||||||| | || Sbjct 158540 CGCTGAGAGACATATTTCACAATTGCGCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCG 158599 Query 52991 CCAGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATA 53050 || | ||||| ||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 158600 CCGCACTCGATCAGCACACAGGAGCTGAACTGACGTGTTGGGGTGCGTACGCCAGACATG 158659 Query 53051 ATAGGTGTTGGAAG 53064 || || || || || Sbjct 158660 ATTGGCGTCGGCAG 158673 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 378785 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 378726 Query 137871 CATCGTCGCCAAATT 137885 || | |||||||| Sbjct 378725 CAGAGGAGCCAAATT 378711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 137811 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137870 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 479467 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 479408 Query 137871 CATCGTCGCCAAATT 137885 || | |||| ||| Sbjct 479407 CAGAGGAGCCAGATT 479393 >seq4 Length=447486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 137302 TGGTCCTGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCATTGGTTCAAA 137361 ||| || |||||||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 299225 TGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 299284 Query 137362 CCCA 137365 |||| Sbjct 299285 CCCA 299288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504743812883800