Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq4 102 1e-16 seq2 87.8 3e-12 seq8 84.2 3e-11 >seq1 Length=970878 Score = 154 bits (170), Expect = 2e-32 Identities = 250/360 (69%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| ||||||| || ||||| | || | |||| ||||||||| ||||| ||| || Sbjct 158326 GTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGT 158385 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | ||||||||| | | || || |||||| ||| ||||| || ||||| ||||| Sbjct 158386 GGCTGCGCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTT 158445 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 |||||| ||||| |||||||||| ||||| ||| |||||| || ||| ||| Sbjct 158446 GTAGAACGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGC 158505 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATATAACTAATAATAGA 120178 ||| ||| ||| || || ||||| || || ||||| ||| || ||| | | ||| | Sbjct 158506 ACGGATACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGC 158565 Query 120179 TGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAACT 120238 || || |||| || || | ||| |||||| | || || |||||| || || Sbjct 158566 GCTGGAGGTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCT 158625 Query 120239 AAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTAAA 120298 || || || ||||||||||| | ||| || || || || || | || || ||||| Sbjct 158626 GAACTGACGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAA 158685 >seq4 Length=447486 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 198934 TGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGA 198993 ||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| | Sbjct 299225 TGGCCCCTTAGCTCAGT-GGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAA 299283 Query 198994 GTCCAGTAGGGGCCACCAGAT 199014 |||| ||||||||||| || Sbjct 299284 ACCCAGCAGGGGCCACCAAAT 299304 >seq2 Length=722220 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 198612 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGA 198671 ||||| ||||||||||||||||||||| || ||||||| ||| |||||| ||||||| Sbjct 220811 TGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGA 220870 Query 198672 ATCCAGTACGGCGCACCA 198689 |||| ||| |||| |||| Sbjct 220871 ATCCTGTAGGGCGTACCA 220888 >seq8 Length=238926 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 54316 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 54257 Query 199840 GTCCTGTATCACCGACCACTT 199860 |||| | || ||||||| || Sbjct 54256 ATCCTCTCTCGCCGACCATTT 54236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 106808 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 106749 Query 199840 GTCCTGTATCACCGACCA 199857 |||| | || ||||||| Sbjct 106748 ATCCTCTCTCGCCGACCA 106731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741390571343720