Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq174 136 1e-27 seq9 105 2e-18 >seq174 Length=42168 Score = 136 bits (150), Expect = 1e-27 Identities = 313/462 (68%), Gaps = 16/462 (3%) Strand=Plus/Minus Query 15906 CAGAGGTTATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTCG 15965 ||||||| || ||| ||||||||| || || ||||||||||||||||| ||||| | | Sbjct 7187 CAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAGGTTG 7128 Query 15966 ACTCAAGCCAGTTTAACGGCTCTATCCCGCAAA-TATCCTGCGAACCGCGAGGGCGTGTA 16024 | | || ||||| | ||| || | | ||| || | ||| | || |||||| | Sbjct 7127 ATGCCAGTCAGTTCAGCGG-TCAGGCACCAAAAGTAACGTGCAAGCCAAAAGGGCGGCTG 7069 Query 16025 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGG 16084 | ||||| ||| || ||||| || | | || | || ||| || ||| ||||| Sbjct 7068 GTTCGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACGTGG-CAGGG 7010 Query 16085 GCGTTT-AAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAG 16143 ||| || | || | || ||||| || || |||||||| || || |||||| || Sbjct 7009 TGATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTGGTGCTGGA 6950 Query 16144 CGACCGCTTTGGGCTGGGCAATCGCCTGACG--GCGGCCAATATTGATAAATGGACGCTT 16201 | ||||| |||| | ||| || || || ||| || || || ||| |||| Sbjct 6949 TAAAATATTTGGTATGGGGA--CGCGTGTCGATGCCACCATGATCGACAAGTGGGAGCTT 6892 Query 16202 TATCAGG-TCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGCAC 16260 || ||| | |||| || ||||||||| ||| |||| || |||||| | | Sbjct 6891 TA-CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGGAA------C 6839 Query 16261 TGAGCCTCGCTATACCTGTAACGTGTACGTGCAGGAGAGGAATGACGCCTATACCGTGTT 16320 ||||| |||| |||||||||||||| | | ||| | | || || |||||||| | Sbjct 6838 GGAGCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTATACCGTTCT 6779 Query 16321 ACGTGATTTTGCGGCGATATTCCGGGGCATGACGTACTGGGG 16362 || |||||||||||||||| ||||| |||| |||||| Sbjct 6778 GAAGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGG 6737 Score = 95.1 bits (104), Expect = 3e-15 Identities = 207/306 (68%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 18306 TCAAGGTGGGGGTGTCCAGTAACGGGCAGTATTACGCTGCCGGGATGGGTATAGGGGTTC 18365 |||| |||| ||| || || |||| | ||||||||||||||||| || || ||| Sbjct 5030 TCAAAGTGGCCGTGGATAGCAATGGGCGTCAGTACGCTGCCGGGATGGGAATTGGAGTTG 4971 Query 18366 AAAATACACCCTCCGGCATGCAGTCACAGGTAATCTTCCTGGCAGACCGTTTCGCCGTGA 18425 |||| ||||| | ||||||||| |||| || | ||||| || ||||| || || |||| Sbjct 4970 AAAACACACCTGCAGGCATGCAGACACAAGTTCTTTTCCTTGCGGACCGATTTGCTGTGA 4911 Query 18426 CTACTATGGTCGGCG--GGACTGTAACACTGCCGTTCGTTATCCAGAATGGCCAGGCCAT 18483 || ||| |||| || | || || | || | || ||||| |||||| |||| Sbjct 4910 TGTCTCAGGTAGGCGCTACACCGAAAACCTTC--TTTGCCATTCAGAACGGCCAGACCAT 4853 Query 18484 TATCAGGGATACAGTCATTGGCGACGGGACCATAAGCAATGCAAAAATTG--GCAATTAC 18541 ||||| | | | ||||| || | ||| || | | || | || | ||| ||| Sbjct 4852 TATCAACTCTGCCTTTATTGGTGATGCGACAATTACGAGCGCGATGATCGCTGCA--TAC 4795 Query 18542 ATCCAGTCGAACAATTATGTTGCCGGCTCTGTTGGCTGGAAACTGGATAAGTCCGGGACG 18601 |||||||| | || ||||| | | | ||||||| ||| | |||| ||||| Sbjct 4794 ATCCAGTCAACGAACTATGTACCAAATGCAGCTGGCTGGCGACTTGGTAAGGATGGGACC 4735 Query 18602 TTTGAG 18607 |||||| Sbjct 4734 TTTGAG 4729 >seq9 Length=205880 Score = 105 bits (116), Expect = 2e-18 Identities = 121/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 26062 GATCACCGCATTAACCAGTTGCGCTTCGTATCCCAGGACACCGTTAACCAGGTG--CGTC 26119 |||||| ||||| ||||| || || ||||||||||| |||||||| || |||| || Sbjct 168528 GATCACTGCATTCACCAGCTGTGCCTCGTATCCCAGAACACCGTTGAC--GGTGAAGGTT 168585 Query 26120 TTTTGCGCCACGGCGTAAGGGTTCATACCCCACTGCATCGCCTGCATGATGATGGCCATG 26179 ||||| || ||||| | || ||||||| |||||||| ||||||||| | | |||| Sbjct 168586 TTTTGGGCGACGGCAAACGGATTCATACGCCACTGCAGGGCCTGCATGGTCACAGCCAGA 168645 Query 26180 CAGTCTGCCGGATTGCCGCGGAGGTGCTCAGGCACCGTTAC 26220 |||||||| | ||||| ||| ||| | || || || || Sbjct 168646 CAGTCTGCGGCTTTGCCCGCGAGATGCGCCGGGACAGTGAC 168686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141867669470586