Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq174 140 8e-29 >seq174 Length=42168 Score = 140 bits (154), Expect = 8e-29 Identities = 610/947 (64%), Gaps = 61/947 (6%) Strand=Plus/Minus Query 14357 TTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 14416 ||| | ||||| || || ||||||||||||||| || ||||||||||| || |||| Sbjct 7191 TTCGCAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAG 7132 Query 14417 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCA--TGCGAACC----GCGC 14470 | || | || ||||||| ||| || | | |||| | | ||| | || | || Sbjct 7131 GTTGATGCCAGTCAGTTCAGCGG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGC 7074 Query 14471 GGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACA 14530 ||| | ||| ||||| || ||||| || |||| | || | |||| ||| || Sbjct 7073 GGCTG-GTT---CGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACG 7018 Query 14531 TGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTG 14590 ||| |||| || || | || | || |||||||| || |||||||| || |||||| Sbjct 7017 TGGCAGGGTGATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTG 6958 Query 14591 GTTGTTTCTGACCGGTTTGGCCTCGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAA 14647 || | | | ||||| | ||| ||| | || ||| | || || || || Sbjct 6957 GTGCTGGATAAAATATTTGGTATGGGGACGCGTGT---CGATGCCACCATGATCGACAAG 6901 Query 14648 TGGACTCTTTATCAGG-TTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGG 14706 ||| ||||| ||| || | ||||| || ||||||||||| | |||||| ||| || Sbjct 6900 TGGGAGCTTTA-CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG 6842 Query 14707 CAACGGTACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTA 14766 ||||| | || |||| |||||| ||||||| ||| ||| | | | || || || Sbjct 6841 -AACGG-----AGCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTA 6788 Query 14767 CACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA 14826 || || ||| || |||| || || ||||||||||| || | ||||||| || Sbjct 6787 TACCGTTCTGAAGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCCA 6728 Query 14827 GATTGTGGCCCTGGCTGACATGCCGC---------------GC------GATGTTGATTA 14865 |||| | | | |||||| |||||| || |||||||||| Sbjct 6727 GATTTTCGTCAATGCTGACGTGCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATTT 6668 Query 14866 CAGCTA-TACGCGCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGA 14924 | || |||| ||| ||||| ||| || ||||||||| || || ||| | | Sbjct 6667 CGTTTACCACGC-CGCAAACGTCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACA 6609 Query 14925 AAAGCCGCTACACCACAGCGCTGGTTTCA--TGGTCAGATCCGGGTAACGCTTATGCCGA 14982 ||| ||||||||| || | | | || ||||| |||||| |||| |||| | || Sbjct 6608 AAAATCGCTACACCTCATGCCAG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGGA 6551 Query 14983 CGCAATGGAGCCGGTATTTGAGCAGGCGCTGGTGGCGCGATACGGCTTCAATCAGCTGGA 15042 | | | ||| || | || | ||||| ||| |||||| | | | || Sbjct 6550 CACCGTAGAGGGCGTTTACGATTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAG 6491 Query 15043 AATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTAT 15102 | || || ||||||||||| ||| ||||| | || |||||||||| || Sbjct 6490 CCTCACGGCTATCGGCTGCACGTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCAT 6431 Query 15103 TCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCC 15162 |||| ||||| ||| ||| | ||||| || | ||||| ||||| || | ||||| Sbjct 6430 TCTCTCCAATGCCAAAGATGGTACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC 6371 Query 15163 GCAGCCGGGCT-ACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCG 15221 | || ||| | ||||||| ||||| ||| | | ||| ||| | |||| Sbjct 6370 -TATCCCCGCTGAAATCATCGGTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCG 6312 Query 15222 GCCGCATCAGCGCCGTTAACGG---TCGCGTTATCAAACTTGACCGC 15265 |||||||||| | ||||| || |||||| | ||| |||||| Sbjct 6311 GCCGCATCAGTTCTGTTAATGGCCTGCGCGTT---ACACTCGACCGC 6268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123897828666138