Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq174 325 1e-84 >seq174 Length=42168 Score = 325 bits (360), Expect = 1e-84 Identities = 521/743 (70%), Gaps = 31/743 (4%) Strand=Plus/Minus Query 8376 GGGTGAAAATATGGCTACGTTGCGCGAACTGATCATCAAAATATCTGCAAACTCTCAG-T 8434 ||||||||| ||||||||| |||||||||| || || ||||| ||||| ||||| ||| | Sbjct 14165 GGGTGAAAA-ATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCT 14108 Query 8435 CATTCCAGTCTGAAATTTCTCGTGCTTCAAGAATGGGGAATGACTATTACCGGGTAATGC 8494 | || ||| ||| ||| | || || || | ||||| |||||||||||| ||| Sbjct 14107 CTTTTCAGAGTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGG 14048 Query 8495 AGACTGGAGGACGCCAATCGGCCGCAGCTTCGCGTGAAACTCAGCGTGCCTT---GG--C 8549 || ||||| ||| | | || ||||| ||||||||| ||||| || | || | Sbjct 14047 AGCAGGGAGGCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACC 13988 Query 8550 TGAG---GTAACTAGTCAAATAAACACCGCGAAGGCCTCAGCACTGGGAATGGCTGGTGC 8606 |||| | | || || || || | || | | || |||| ||| | || | Sbjct 13987 TGAGTGAGCAGCTTGT---AT-----CCACTAAAGAGACGGCGCTGGAGATGACCGGCGT 13936 Query 8607 ATTTNNNNNNNNNNNNNNGACTGGTCATCTTATATCGCTGGCCGATGAATGGAGCTCTGT 8666 || | || || || | |||| || | |||| | || Sbjct 13935 CTTCGCCGGCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGT 13876 Query 8667 TAATGCCAGGCTAAAGCAGGCTTCCCAGTCGTCAGATGATTTCA---CGGAGTCCCAGCG 8723 || ||| | || ||||||||||| ||||| ||| || |||| ||| | ||| Sbjct 13875 GAACGCCCGCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTG---CAGAA 13819 Query 8724 GGCGCTGATGGATATTAGCCAGCGAACCGGAACCGCCTTCTCTGATAATGCGAGTCTTTT 8783 ||||||||||||| |||||||| ||||| || | || || ||||||| ||||| Sbjct 13818 ATCGCTGATGGATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTA 13759 Query 8784 TGCGCGTTCAGCCGCTTCTATGCGTGAATATGGCTACAGTTCAGAAGAGGTTCTGAAGGT 8843 ||||||||| || ||||| ||||| |||| || ||| | | | || || || ||||| Sbjct 13758 TGCGCGTTCCGCTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGT 13699 Query 8844 AACCGAGGCTATATCAACAGGGCTTAAGCTGTCAGGCGCAAGCGCGTCTGAAGCGAGT-- 8901 |||||||| |||||||||||||||||||||||||||| || ||||||| || Sbjct 13698 TACCGAGGCAGTATCAACAGGGCTTAAGCTGTCAGGCGCGAGT---TCTGAAGAAAGCAG 13642 Query 8902 -TCGGTAATCACGCAGTTCAGCCAGGCTCTGGCGCAGGGTGTTCTTCGAGGCGAGGAATT 8960 || || ||||| |||||||||||||| ||||||||||| || ||||| || ||||| || Sbjct 13641 CTCTGTTATCACCCAGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTT 13582 Query 8961 TAACTCCGTCAACGAAAACGGTGATCGAGTTATCCGTGCTCTTGCCGCAGGGATGGGTGT 9020 ||| | || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct 13581 CAACGCAGTTAACGAGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGT 13522 Query 9021 AGCTCGTAAAGATCTGAAGGCAATGGCCGATCAGGGGATGCTAACCGCAGATAAAGTTGT 9080 || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 13521 TGCCCGCAAAGACCTTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGT 13462 Query 9081 CCCGGCCCTGATAAGTCAACTTG 9103 || ||||||| || || |||| Sbjct 13461 GCCAGCCCTGACCAGCCAGCTTG 13439 Score = 132 bits (146), Expect = 1e-26 Identities = 962/1526 (63%), Gaps = 79/1526 (5%) Strand=Plus/Minus Query 14506 GAACAGCCTGATGATCTGCAATCTGTAGCGAAGGCAAAAATCCTCGTTGCGCTTGGGGAA 14565 |||||||| |||||||||| ||| | || || |||||| || | || | || Sbjct 7761 GAACAGCCAGATGATCTGCTGTCTATCGCAAAATTAAAAATGCTGCTGGCTATATCAGAG 7702 Query 14566 GGTGAGTTTGCAGGGC-AGCTCACCGGCAAAGATATCTACCTGGACGGAACAGCGCTGGA 14624 |||||| || ||||| | | |||| || | || |||||| ||| || ||| Sbjct 7701 GGTGAGATT-CAGGGTGATTTAACCGCGCAACAGATTTACCTGAACGACACCCAATTGGC 7643 Query 14625 GAATGCTGACGGCTCCCAAAACTTCAGCGGGGTAACGTGGGAGTTTCGCGCGGGAACTCA 14684 ||| | |||||| || | ||||||| ||| ||| |||||| | || || || || Sbjct 7642 GAACGAAGACGGCACCTACAACTTCACCGGCGTAGTGTGGGACTGGCGTAAAGGTACGCA 7583 Query 14685 GGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAGCGTAGGAACTGA 14744 || || | |||||||||||||| || | ||| || ||| | || || || Sbjct 7582 GGACCAGACCTATATTCAGGGTATGCCTGAAGTCGATAATGAGCTTTCTGTTGGGGTTGC 7523 Query 14745 GGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCTTTCAGCAGTTCG 14804 ||| | || | |||||||| ||| |||||||||| | || || ||||| Sbjct 7522 AGTAACGCAGGCAATCGCCTGGACCCGCCAGTTTACCAATCTGACACTGGATGCCGTTCG 7463 Query 14805 CCTGCGTCTTAAATGGCCCTCGCTTTTCAAACAGGA---AGACGACGGCGATCTGGTGGG 14861 | | || | | ||| | || | ||| | |||| | |||||| |||| || Sbjct 7462 CATTAAGCTGAGCTTGCC---GGTTCAGTATCAGTATAAAGACAATGGCGATATGGTCGG 7406 Query 14862 TTACTCGGTCA---ATTATGCGATTGACCTACAGACGGACGGCGGCACATGGCAGACGGT 14918 | | || | | ||||| ||||| || || ||||| || ||||| ||||| Sbjct 7405 TACC---GTAACGCAGTATGCCATTGATCTCTCAACTGACGGTGGTTCATGGGTCACGGT 7349 Query 14919 ACTCAATACCAGCGTGACCGGTAAAACGACGTCTGGTTATGAGCGCAGCCACCGTATCGA 14978 | | || | ||||||||| ||||||| ||| ||||| || || ||||| Sbjct 7348 GGTGGACGGAAGGTTTGACGGTAAAACTACGTCTGAATATCAGCGCGATCATCGCATCGA 7289 Query 14979 TTTACCGCAGGCTGGCAGCAC-CTGGACAATACGTCTGCGTAAGATTACCTCTGACGCCA 15037 ||||| | || || | |||| || | | |||||| |||||| |||| || Sbjct 7288 CTTACCTAAAGCCA-CATCTGGCTGGTCAGTCAGGGTGCGTAGAATTACCGCTGATTCCT 7230 Query 15038 ACAGCG-CGAAGATCGGCGACACGATGATGCTGCAGAGCTTCACCGAGGTGATTGACGCC 15096 || | | ||| | || | | | | ||| | ||||| || ||| | Sbjct 7229 -CATCATCAAAGCTTATTAACGCTTTCAAAGTTTTTTCGTTCGCAGAGGTCATCGACAGC 7171 Query 15097 AAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGACTCAAGCCAGTTCAAC 15156 |||||||||||||| || ||||||||||| || |||| | || | || ||||||| | Sbjct 7170 AAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAGGTTGATGCCAGTCAGTTCAGC 7111 Query 15157 GGCTCTATTCCTCAAATTTCA--TGCGAACC----GCGCGGCCGCGTTATCCGCGTTCCA 15210 || || | | |||| | | ||| | || | ||||| | ||| ||||| || Sbjct 7110 GG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGCGGCTG-GTT---CGCGTGCCG 7057 Query 15211 GATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCGTTTAAGTGG 15270 ||||| || |||| | || | |||| ||| || ||| |||| || || | Sbjct 7056 ACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACGTGGCAGGGTGATTTCAAATAC 6997 Query 15271 GCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGACCGGTTCGGC 15330 || | || |||||||| || |||||||| || |||||||| | | | || || Sbjct 6996 GCCTATACCGATAACCCGGCATGGATTTTCTATGACCTGGTGCTGGATAAAATATTTGGT 6937 Query 15331 CTTGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAATGGACGCTTTATCAGG-TTGC 15386 | ||| ||| | || ||| | || || || || ||| |||||| ||| || | Sbjct 6936 ATGGGGACGCGTGT---CGATGCCACCATGATCGACAAGTGGGAGCTTTA-CAGTATTTC 6881 Query 15387 TCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCACGTTA 15446 ||||| || ||||||||||| | |||||| ||| || ||||| | || || | Sbjct 6880 GCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG-AACGG-----AGCCGCGCTT 6827 Query 15447 TACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGATTTTGC 15506 |||||| ||||||| ||| ||| | | | || || || || || ||| || |||| Sbjct 6826 TACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTATACCGTTCTGAAGGACATTGC 6767 Query 15507 CGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATTGTGGCCCTGGCTGACAT 15566 || || ||||||||||| || | ||||||| |||||| | | | |||||| | Sbjct 6766 GGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCCAGATTTTCGTCAATGCTGACGT 6707 Query 15567 GCCGC---------------GC------GATGTTGATTACAGCTA-TACGCGCGCTAACG 15604 ||||| || |||||||||| | || |||| ||| |||| Sbjct 6706 GCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATTTCGTTTACCACGC-CGCAAACG 6648 Query 15605 TTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGC 15664 | ||| || ||||||||| || || ||| | |||| ||||||||| || | Sbjct 6647 TCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACAAAAATCGCTACACCTCATGCC 6588 Query 15665 TGGTTTCA--TGGTCAGACCCGGGTAACGCTTATGCCGACGCAATGGAGCCGGTATTTGA 15722 | | || ||||| || ||| |||| |||| | ||| | | ||| || | || Sbjct 6587 AG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGGACACCGTAGAGGGCGTTTACGA 6530 Query 15723 GCAGGCGCTGGTGGCGCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCAC 15782 | ||||| ||| |||||| | | | || | || || ||||||||||| Sbjct 6529 TTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAGCCTCACGGCTATCGGCTGCAC 6470 Query 15783 CAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCG 15842 ||| ||||| | || |||||||||| |||||| |||| ||| ||| | Sbjct 6469 GTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCATTCTCTCCAATGCCAAAGATGG 6410 Query 15843 CGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCT-ACATCATCG 15901 ||||| || | ||||| ||||| || | ||||| | || ||| | ||||||| Sbjct 6409 TACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC-TATCCCCGCTGAAATCATCG 6351 Query 15902 CCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACG 15961 ||||| ||| | | ||| ||| | |||||||||||||| | ||||| | Sbjct 6350 GTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCGGCCGCATCAGTTCTGTTAATG 6291 Query 15962 G---TCGCGTTATCAAACTTGACCGC 15984 | |||||| | ||| |||||| Sbjct 6290 GCCTGCGCGTT---ACACTCGACCGC 6268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132882749068362