Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq174 325 1e-84 >seq174 Length=42168 Score = 325 bits (360), Expect = 1e-84 Identities = 521/743 (70%), Gaps = 31/743 (4%) Strand=Plus/Minus Query 8375 GGGTGAAAATATGGCTACGTTGCGCGAACTGATCATCAAAATATCTGCAAACTCTCAG-T 8433 ||||||||| ||||||||| |||||||||| || || ||||| ||||| ||||| ||| | Sbjct 14165 GGGTGAAAA-ATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCT 14108 Query 8434 CATTCCAGTCTGAAATTTCTCGTGCTTCAAGAATGGGGAATGACTATTACCGGGTAATGC 8493 | || ||| ||| ||| | || || || | ||||| |||||||||||| ||| Sbjct 14107 CTTTTCAGAGTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGG 14048 Query 8494 AGACTGGAGGACGCCAATCGGCCGCAGCTTCGCGTGAAACTCAGCGTGCCTT---GG--C 8548 || ||||| ||| | | || ||||| ||||||||| ||||| || | || | Sbjct 14047 AGCAGGGAGGCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACC 13988 Query 8549 TGAG---GTAACTAGTCAAATAAACACCGCGAAGGCCTCAGCACTGGGAATGGCTGGTGC 8605 |||| | | || || || || | || | | || |||| ||| | || | Sbjct 13987 TGAGTGAGCAGCTTGT---AT-----CCACTAAAGAGACGGCGCTGGAGATGACCGGCGT 13936 Query 8606 ATTTNNNNNNNNNNNNNNGACTGGTCATCTTATATCGCTGGCCGATGAATGGAGCTCTGT 8665 || | || || || | |||| || | |||| | || Sbjct 13935 CTTCGCCGGCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGT 13876 Query 8666 TAATGCCAGGCTAAAGCAGGCTTCCCAGTCGTCAGATGATTTCA---CGGAGTCCCAGCG 8722 || ||| | || ||||||||||| ||||| ||| || |||| ||| | ||| Sbjct 13875 GAACGCCCGCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTG---CAGAA 13819 Query 8723 GGCGCTGATGGATATTAGCCAGCGAACCGGAACCGCCTTCTCTGATAATGCGAGTCTTTT 8782 ||||||||||||| |||||||| ||||| || | || || ||||||| ||||| Sbjct 13818 ATCGCTGATGGATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTA 13759 Query 8783 TGCGCGTTCAGCCGCTTCTATGCGTGAATATGGCTACAGTTCAGAAGAGGTTCTGAAGGT 8842 ||||||||| || ||||| ||||| |||| || ||| | | | || || || ||||| Sbjct 13758 TGCGCGTTCCGCTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGT 13699 Query 8843 AACCGAGGCTATATCAACAGGGCTTAAGCTGTCAGGCGCAAGCGCGTCTGAAGCGAGT-- 8900 |||||||| |||||||||||||||||||||||||||| || ||||||| || Sbjct 13698 TACCGAGGCAGTATCAACAGGGCTTAAGCTGTCAGGCGCGAGT---TCTGAAGAAAGCAG 13642 Query 8901 -TCGGTAATCACGCAGTTCAGCCAGGCTCTGGCGCAGGGTGTTCTTCGAGGCGAGGAATT 8959 || || ||||| |||||||||||||| ||||||||||| || ||||| || ||||| || Sbjct 13641 CTCTGTTATCACCCAGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTT 13582 Query 8960 TAACTCCGTCAACGAAAACGGTGATCGAGTTATCCGTGCTCTTGCCGCAGGGATGGGTGT 9019 ||| | || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct 13581 CAACGCAGTTAACGAGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGT 13522 Query 9020 AGCTCGTAAAGATCTGAAGGCAATGGCCGATCAGGGGATGCTAACCGCAGATAAAGTTGT 9079 || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 13521 TGCCCGCAAAGACCTTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGT 13462 Query 9080 CCCGGCCCTGATAAGTCAACTTG 9102 || ||||||| || || |||| Sbjct 13461 GCCAGCCCTGACCAGCCAGCTTG 13439 Score = 136 bits (150), Expect = 1e-27 Identities = 609/947 (64%), Gaps = 61/947 (6%) Strand=Plus/Minus Query 15123 TTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 15182 ||| | ||||| || || ||||||||||||||| || ||||||||||| || |||| Sbjct 7191 TTCGCAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAG 7132 Query 15183 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCA--TGCGAACC----GCGC 15236 | || | || ||||||| ||| || | | |||| | | ||| | || | || Sbjct 7131 GTTGATGCCAGTCAGTTCAGCGG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGC 7074 Query 15237 GGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACA 15296 ||| | ||| ||||| || ||||| || |||| | || | |||| ||| || Sbjct 7073 GGCTG-GTT---CGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACG 7018 Query 15297 TGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTG 15356 ||| |||| || || | || | || |||||||| || |||||||| || |||||| Sbjct 7017 TGGCAGGGTGATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTG 6958 Query 15357 GTTGTTTCTGACCGGTTTGGCCTCGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAA 15413 || | | | ||||| | ||| ||| | || ||| | || || || || Sbjct 6957 GTGCTGGATAAAATATTTGGTATGGGGACGCGTGT---CGATGCCACCATGATCGACAAG 6901 Query 15414 TGGACTCTTTATCAGG-TTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGG 15472 ||| ||||| ||| || | ||||| || ||||||||||| | |||||| ||| || Sbjct 6900 TGGGAGCTTTA-CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG 6842 Query 15473 CAACGGTACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTA 15532 ||||| | || |||| |||||| ||||||| ||| ||| | | | || || || Sbjct 6841 -AACGG-----AGCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTA 6788 Query 15533 CACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA 15592 || || ||| || |||| || || ||||||||||| || | ||||||| || Sbjct 6787 TACCGTTCTGAAGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCCA 6728 Query 15593 GATTGTGGCCCTGGCTGACATGCCGC---------------GC------GATGTTGATTA 15631 |||| | | | |||||| |||||| || |||||||||| Sbjct 6727 GATTTTCGTCAATGCTGACGTGCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATTT 6668 Query 15632 CAGCTA-TACGCGCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGA 15690 | || |||| ||| ||||| ||| || ||||||||| || || ||| | | Sbjct 6667 CGTTTACCACGC-CGCAAACGTCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACA 6609 Query 15691 AAAGCCGCTACACCACAGCGCTGGTTTCA--TGGTCAGATCCGGGTAACGCTTATGCCGA 15748 ||| ||||||||| || | | | || ||||| |||||| |||| |||| | || Sbjct 6608 AAAATCGCTACACCTCATGCCAG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGGA 6551 Query 15749 CGCAATGGAGCCGGTATTTGAGCAGGCGCTGGTGGCGCGATACGGCTTCAATCAGCTGGA 15808 | | | ||| || | || | ||||| ||| |||||| | | | || Sbjct 6550 CACCGTAGAGGGCGTTTACGATTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAG 6491 Query 15809 AATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTAT 15868 | || || ||||||||||| ||| ||||| | || |||||||||| || Sbjct 6490 CCTCACGGCTATCGGCTGCACGTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCAT 6431 Query 15869 TCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCC 15928 |||| |||| ||| ||| | ||||| || | ||||| ||||| || | ||||| Sbjct 6430 TCTCTCCAATGCCAAAGATGGTACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC 6371 Query 15929 GCAGCCGGGCT-ACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCG 15987 | || ||| | ||||||| ||||| ||| | | ||| ||| | |||| Sbjct 6370 -TATCCCCGCTGAAATCATCGGTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCG 6312 Query 15988 GCCGCATCAGCGCCGTTAACGG---TCGCGTTATCAAACTTGACCGC 16031 |||||||||| | ||||| || |||||| | ||| |||||| Sbjct 6311 GCCGCATCAGTTCTGTTAATGGCCTGCGCGTT---ACACTCGACCGC 6268 Score = 91.5 bits (100), Expect = 4e-14 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 10137 CAGAATGCGGTATATCAGTCGATGATCATGATGAATGGTCAGCATACTGAATTTAACCGT 10196 |||||| | | ||||||||| || ||||||||||||| ||||| |||||||||||||| Sbjct 12431 CAGAATTCCGCTTATCAGTCGCTGCTCATGATGAATGGCCAGCACACTGAATTTAACCGG 12372 Query 10197 CTGCTGGGGCTGGGAAATCAGCT 10219 || ||| |||||| |||||||| Sbjct 12371 CTTCTGTCGCTGGGTAATCAGCT 12349 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 6056 GGCGTCCATATTCGTGGCGTTAACCCGCGC-ACCGGCAACAGCGATAACACGATGAAGGC 6114 ||||| |||||||||||| || || ||| | ||||||||| || | ||||||||| | Sbjct 16043 GGCGTGCATATTCGTGGCAGAAATCC-CGCTAACGGCAACAGTGACACCACGATGAAAAC 15985 Query 6115 GAAGAACCCGAGAAACGCCTTTTACTGGCGATTCGTTGAAATGGGAACCGCGAACATGCC 6174 ||| |||| || |||||||||||||| || | || ||| || | || ||||| Sbjct 15984 GAATTCTCCGAACAATGCCTTTTACTGGCGTTTTCTGGAGGAGGGTACATCAAAGATGCC 15925 Query 6175 TGCACATCCGTTTGTGCGACCCGCTTACGATA 6206 ||| ||||| ||||| || || || | ||||| Sbjct 15924 TGCTCATCCTTTTGTCCGGCCAGCATTCGATA 15893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124752164046264