Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq174 322 1e-83 >seq174 Length=42168 Score = 322 bits (356), Expect = 1e-83 Identities = 520/743 (70%), Gaps = 31/743 (4%) Strand=Plus/Minus Query 8375 GGGTGAAAATATGGCTACGTTGCGCGAACTGATCATCAAAATATCTGCAAACTCTCAG-T 8433 ||||||||| ||||||||| |||||||||| || || ||||| ||||| ||||| ||| | Sbjct 14165 GGGTGAAAA-ATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCT 14108 Query 8434 CATTCCAGTCTGAAATTTCTCGTGCTTCAAGAATGGGGAATGACTATTACCGGGTAATGC 8493 | || ||| ||| ||| | || || || | ||||| |||||||||||| ||| Sbjct 14107 CTTTTCAGAGTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGG 14048 Query 8494 AGACTGGAGGACGCCAATCGGCCGCAGCTTCGCGTGAAACTCAGCGTGCCTT---GG--C 8548 || ||||| ||| | | || ||||| ||||||||| ||||| || | || | Sbjct 14047 AGCAGGGAGGCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACC 13988 Query 8549 TGAG---GTAACTAGTCAAATAAACACCGCGAAGGCCTCAGCACTGGGAATGGCTGGTGC 8605 |||| | | || || || || | || | | || |||| ||| | || | Sbjct 13987 TGAGTGAGCAGCTTGT---AT-----CCACTAAAGAGACGGCGCTGGAGATGACCGGCGT 13936 Query 8606 ATTTNNNNNNNNNNNNNNGACTGGTCATCTTATATCGCTGGCCGATGAATGGAGCTCTAT 8665 || | || || || | |||| || | |||| | | Sbjct 13935 CTTCGCCGGCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGT 13876 Query 8666 TAATGCCAGGCTAAAGCAGGCTTCCCAGTCGTCAGATGATTTCA---CGGAGTCCCAGCG 8722 || ||| | || ||||||||||| ||||| ||| || |||| ||| | ||| Sbjct 13875 GAACGCCCGCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTG---CAGAA 13819 Query 8723 GGCGCTGATGGATATTAGCCAGCGAACCGGAACCGCCTTCTCTGATAATGCGAGTCTTTT 8782 ||||||||||||| |||||||| ||||| || | || || ||||||| ||||| Sbjct 13818 ATCGCTGATGGATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTA 13759 Query 8783 TGCGCGTTCAGCCGCTTCTATGCGTGAATATGGCTACAGTTCAGAAGAGGTTCTGAAGGT 8842 ||||||||| || ||||| ||||| |||| || ||| | | | || || || ||||| Sbjct 13758 TGCGCGTTCCGCTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGT 13699 Query 8843 AACCGAGGCTATATCAACAGGGCTTAAGCTGTCAGGCGCAAGCGCGTCTGAAGCGAGT-- 8900 |||||||| |||||||||||||||||||||||||||| || ||||||| || Sbjct 13698 TACCGAGGCAGTATCAACAGGGCTTAAGCTGTCAGGCGCGAGT---TCTGAAGAAAGCAG 13642 Query 8901 -TCGGTAATCACGCAGTTCAGCCAGGCTCTGGCGCAGGGTGTTCTTCGAGGCGAGGAATT 8959 || || ||||| |||||||||||||| ||||||||||| || ||||| || ||||| || Sbjct 13641 CTCTGTTATCACCCAGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTT 13582 Query 8960 TAACTCCGTCAACGAAAACGGTGATCGAGTTATCCGTGCTCTTGCCGCAGGGATGGGTGT 9019 ||| | || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct 13581 CAACGCAGTTAACGAGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGT 13522 Query 9020 AGCTCGTAAAGATCTGAAGGCAATGGCCGATCAGGGGATGCTAACCGCAGATAAAGTTGT 9079 || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 13521 TGCCCGCAAAGACCTTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGT 13462 Query 9080 CCCGGCCCTGATAAGTCAACTTG 9102 || ||||||| || || |||| Sbjct 13461 GCCAGCCCTGACCAGCCAGCTTG 13439 Score = 136 bits (150), Expect = 1e-27 Identities = 609/947 (64%), Gaps = 61/947 (6%) Strand=Plus/Minus Query 15075 TTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 15134 ||| | ||||| || || ||||||||||||||| || ||||||||||| || |||| Sbjct 7191 TTCGCAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAG 7132 Query 15135 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCA--TGCGAACC----GCGC 15188 | || | || ||||||| ||| || | | |||| | | ||| | || | || Sbjct 7131 GTTGATGCCAGTCAGTTCAGCGG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGC 7074 Query 15189 GGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACA 15248 ||| | ||| ||||| || ||||| || |||| | || | |||| ||| || Sbjct 7073 GGCTG-GTT---CGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACG 7018 Query 15249 TGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTG 15308 ||| |||| || || | || | || |||||||| || |||||||| || |||||| Sbjct 7017 TGGCAGGGTGATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTG 6958 Query 15309 GTTGTTTCTGACCGGTTTGGCCTCGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAA 15365 || | | | ||||| | ||| ||| | || ||| | || || || || Sbjct 6957 GTGCTGGATAAAATATTTGGTATGGGGACGCGTGT---CGATGCCACCATGATCGACAAG 6901 Query 15366 TGGACTCTTTATCAGG-TTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGG 15424 ||| ||||| ||| || | ||||| || ||||||||||| | |||||| ||| || Sbjct 6900 TGGGAGCTTTA-CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG 6842 Query 15425 CAACGGTACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTA 15484 ||||| | || |||| |||||| ||||||| ||| ||| | | | || || || Sbjct 6841 -AACGG-----AGCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTA 6788 Query 15485 CACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA 15544 || || ||| || |||| || || ||||||||||| || | ||||||| || Sbjct 6787 TACCGTTCTGAAGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCCA 6728 Query 15545 GATTGTGGCCCTGGCTGACATGCCGC---------------GC------GATGTTGATTA 15583 |||| | | | |||||| |||||| || |||||||||| Sbjct 6727 GATTTTCGTCAATGCTGACGTGCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATTT 6668 Query 15584 CAGCTA-TACGCGCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGA 15642 | || |||| ||| ||||| ||| || ||||||||| || || ||| | | Sbjct 6667 CGTTTACCACGC-CGCAAACGTCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACA 6609 Query 15643 AAAGCCGCTACACCACAGCGCTGGTTTCA--TGGTCAGATCCGGGTAACGCTTATGCCGA 15700 ||| ||||||||| || | | | || ||||| |||||| |||| |||| | || Sbjct 6608 AAAATCGCTACACCTCATGCCAG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGGA 6551 Query 15701 CGCAATGGAGCCGGTATTTGAGCAGGCGCTGGTGGCGCGATACGGCTTCAATCAGCTGGA 15760 | | | ||| || | || | ||||| ||| |||||| | | | || Sbjct 6550 CACCGTAGAGGGCGTTTACGATTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAG 6491 Query 15761 AATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTAT 15820 | || || ||||||||||| ||| ||||| | || |||||||||| || Sbjct 6490 CCTCACGGCTATCGGCTGCACGTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCAT 6431 Query 15821 TCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCC 15880 |||| |||| ||| ||| | ||||| || | ||||| ||||| || | ||||| Sbjct 6430 TCTCTCCAATGCCAAAGATGGTACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC 6371 Query 15881 GCAGCCGGGCT-ACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCG 15939 | || ||| | ||||||| ||||| ||| | | ||| ||| | |||| Sbjct 6370 -TATCCCCGCTGAAATCATCGGTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCG 6312 Query 15940 GCCGCATCAGCGCCGTTAACGG---TCGCGTTATCAAACTTGACCGC 15983 |||||||||| | ||||| || |||||| | ||| |||||| Sbjct 6311 GCCGCATCAGTTCTGTTAATGGCCTGCGCGTT---ACACTCGACCGC 6268 Score = 111 bits (122), Expect = 4e-20 Identities = 410/627 (65%), Gaps = 19/627 (3%) Strand=Plus/Minus Query 5588 TGGCAGGCCGATTTCTGCCGAGGTGAAGGGGATCAGCGGCAGAGAGCAGATGTCAGGCGG 5647 ||||| | || | | || || || || || |||||| || | |||| ||| | || Sbjct 16508 TGGCATGACGGTGTGGGCTGAAGTTAAAGGCATCAGCAGCCGGGAGCTCATGACCTCGGG 16449 Query 5648 CGTGGAGACGGCGCAGGCAACTATTCGCGTCTGGATGCGCTTCAGGGCTGACCTGAACGC 5707 ||| || | | ||||||| || ||||||||||| || ||||| |||| | | || Sbjct 16448 CGTTGAAAAACCAGAGGCAACGATACGCGTCTGGATTCGTTTCAGAACTGATGTAACAGC 16389 Query 5708 CTCTTCTCGTCTGGAAGTGC-TAAGCGGGCCGTATAAAGGCCAGGTGCTAAATATCATCG 5766 | || || ||| || ||| | | || |||| ||| || ||| || || | | | Sbjct 16388 TGCCTCCCGGCTGAAA-TGCATTACTGGTCCGTTTAAGGGAATGGTTCTTGATGTGACAG 16330 Query 5767 GTCCTCCGGTAGCAAATTCGACCGGCACTCGCCTGGAAATTCTTTGCAAAACGGGAGCTG 5826 | || || | | | | | |||| || |||||||| || || ||| | || Sbjct 16329 GAGAGCCTATACCGGACGCCAGAGCGACTCAGCTCGAAATTCTCTGTAAGCAGGGGG-TG 16271 Query 5827 AAAA-ATGATAGAAACGAGCCTCGATTTTTCCGGCCTGAATGACATAGCAAAGGATCTGG 5885 || | |||||| || ||||||||||| || || || ||| || | ||| || | Sbjct 16270 AAGACATGATAACGACCAGCCTCGATTTCTCTGGTTTGTCTGATTTATCCCGGGACCTTG 16211 Query 5886 AGGCGCTTAGCCGCGCTGAAAACAATAAGGTTCTT---CGTGATGCCACGCGCGCCGGCG 5942 || || ||| || || | || ||||||| |||| | || | ||||| | Sbjct 16210 AGATCCTCAGCAAAGCAGAGAGCAGGGCGGTTCTTAATCGTGCGGTCAGG---GCCGGAG 16154 Query 5943 CGGAAGTGCTTAAGGAAGAAGTGATCG-CACGTGCACCGGTACGCACCGGAAAACTGaaa 6001 | | ||| ||||||||||| | ||| ||| |||||| | | | |||||| || || Sbjct 16153 CCGGTGTGGTTAAGGAAGAAATTATCAACAC-TGCACCAGAAAAGAGCGGAAAGCTTAAG 16095 Query 6002 aaaaaCGTGGTGGTGGTTACCCAAAAAAGC-CGCCGCCGCGGGGAGATTTCTTCCGGCGT 6060 || | || ||| | || ||| | ||||| || || | || ||||| Sbjct 16094 CGGAATATCGTTGTGCTCTCCGGTAAAGGTGCGCCGG-GCACGGCAACGGCT---GGCGT 16039 Query 6061 CCATATTCGTGGCGTTAACCCGCGC-ACCGGCAACAGCGATAACACGATGAAGGCGAATA 6119 |||||||||||| || || ||| | ||||||||| || | ||||||||| ||||| Sbjct 16038 GCATATTCGTGGCAGAAATCC-CGCTAACGGCAACAGTGACACCACGATGAAAACGAATT 15980 Query 6120 ACCCGAGAAACGCCTTTTACTGGCGATTCGTTGAGCTGGGCACCGCGAACATGCCTGCAC 6179 |||| || |||||||||||||| || | ||| ||| || | || |||||||| | Sbjct 15979 CTCCGAACAATGCCTTTTACTGGCGTTTTCTGGAGGAGGGTACATCAAAGATGCCTGCTC 15920 Query 6180 ATCCGTTTGTGCGACCCGCTTACGATA 6206 |||| ||||| || || || | ||||| Sbjct 15919 ATCCTTTTGTCCGGCCAGCATTCGATA 15893 Score = 84.2 bits (92), Expect = 6e-12 Identities = 188/280 (67%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 22306 CATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGAGATGAATG--TCGAGCCTCATG 22363 ||||| ||| | |||||| | | ||| ||| | | ||| ||| | | | ||| |||| Sbjct 40968 CATGACTTCCGCAGAACGATGGCTACTCGTTTAGCAGAG--GAAGGGATTGCGCCCCATG 40911 Query 22364 TTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAATAAACACG 22423 | | |||| |||||| || ||||| ||||| || | | | || || || || |||| Sbjct 40910 TCATTGAGAAAATGCTGGGGCATGACCTTGGAGGAGTGCTTGCAGTTTATAACAAGCACG 40851 Query 22424 ACTGGATAGAGGCTCAGCGCAAAG----CGTATGAGCTTCACGCTGATAAATTGTTCTGG 22479 | ||| ||| || || |||| | ||||| ||| ||||||| || | || | Sbjct 40850 ATTGGTTAGCGGAACA----AAAGGTTGCTTATGAACTTTACGCTGACAAGATTTTTGAG 40795 Query 22480 CACATCAGGAGCATTTCTGATTAACGCCACCGTTAAGAATCCACCCTTCAACAGCTTCAC 22539 || |||| | || ||||||||||||| ||||| | ||||||| || || | | Sbjct 40794 CAGATCAAGCTGATCTCTGATTAACGCCGCCGTTTAAAATCCACTGCTCTACCTCAGCCA 40735 Query 22540 GAAGGTATGATTTGGGGTGGGTTCTGACTGGCTTCGGAAA 22579 | | |||| ||| ||| | |||| ||||| || || || Sbjct 40734 GTAAGTATTTTTTTGGGCGATTTCTTACTGGTTTGGGGAA 40695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126518430450120