Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq174 123 7e-24 seq9 105 2e-18 >seq174 Length=42168 Score = 123 bits (136), Expect = 7e-24 Identities = 306/460 (67%), Gaps = 12/460 (3%) Strand=Plus/Minus Query 16179 CAGAGGTCATTGACGCCAAACTGCGTTATCCAAACACCGCGCTGTTGTACATCGAATTCG 16238 |||||||||| ||| ||||||||| || || || ||||||||| |||| ||||| | | Sbjct 7187 CAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAGGTTG 7128 Query 16239 ACTCAAGCCAGTTTAACGGCTCTATCCCGCAAA-TATCCTGCGAACCGCGAGGGCGTGTA 16297 | | || ||||| | ||| || | | ||| || | ||| | || |||||| | Sbjct 7127 ATGCCAGTCAGTTCAGCGG-TCAGGCACCAAAAGTAACGTGCAAGCCAAAAGGGCGGCTG 7069 Query 16298 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGGGG 16357 | ||||| ||| || ||||| || | | || | ||| ||| || ||| ||| Sbjct 7068 GTTCGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACGTGGCAGGGT 7009 Query 16358 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGC 16417 | || || | || | || ||||| || || |||||||| || || |||||| || Sbjct 7008 GATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTGGTGCTGGAT 6949 Query 16418 GACCGCTTTGGGCTGGGCAATCGCCTGACG--GCGGCCAATATTGATAAATGGACGCTTT 16475 | ||||| |||| | ||| || || || ||| || || || ||| ||||| Sbjct 6948 AAAATATTTGGTATGGGGA--CGCGTGTCGATGCCACCATGATCGACAAGTGGGAGCTTT 6891 Query 16476 ACCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGCACTG 16535 || | |||| || ||||||||| ||| |||| || |||||| | | | Sbjct 6890 ACAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGGAA------CGG 6837 Query 16536 AGCCTCGCTATACCTGCAACGTGTATGTGCAGGAGAGGAATGACGCCTATACCGTGTTAC 16595 |||| |||| |||||| ||||||| | ||| | | || || |||||||| | Sbjct 6836 AGCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTATACCGTTCTGA 6777 Query 16596 GAGATTTTGCGGCGATATTCCGGGGCATGACTTACTGGGG 16635 || |||||||||||||||| ||||| || | |||||| Sbjct 6776 AGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGG 6737 >seq9 Length=205880 Score = 105 bits (116), Expect = 2e-18 Identities = 121/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 25555 GATCACCGCATTAACCAGTTGCGCTTCGTATCCCAGGACACCGTTAACCAGGTG--CGTC 25612 |||||| ||||| ||||| || || ||||||||||| |||||||| || |||| || Sbjct 168528 GATCACTGCATTCACCAGCTGTGCCTCGTATCCCAGAACACCGTTGAC--GGTGAAGGTT 168585 Query 25613 TTTTGCGCCACGGCGTAAGGGTTCATACCCCACTGCATCGCCTGCATGATGATGGCCATG 25672 ||||| || ||||| | || ||||||| |||||||| ||||||||| | | |||| Sbjct 168586 TTTTGGGCGACGGCAAACGGATTCATACGCCACTGCAGGGCCTGCATGGTCACAGCCAGA 168645 Query 25673 CAGTCTGCCGGATTGCCGCGGAGGTGCTCAGGCACCGTTAC 25713 |||||||| | ||||| ||| ||| | || || || || Sbjct 168646 CAGTCTGCGGCTTTGCCCGCGAGATGCGCCGGGACAGTGAC 168686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145038629626784