Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq174 325 1e-84 >seq174 Length=42168 Score = 325 bits (360), Expect = 1e-84 Identities = 521/743 (70%), Gaps = 31/743 (4%) Strand=Plus/Minus Query 8428 GGGTGAAAATATGGCTACGTTGCGCGAACTGATCATCAAAATATCTGCAAACTCTCAG-T 8486 ||||||||| ||||||||| |||||||||| || || ||||| ||||| ||||| ||| | Sbjct 14165 GGGTGAAAA-ATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCT 14108 Query 8487 CATTCCAGTCTGAAATTTCTCGTGCTTCAAGAATGGGGAATGACTATTACCGGGTAATGC 8546 | || ||| ||| ||| | || || || | ||||| |||||||||||| ||| Sbjct 14107 CTTTTCAGAGTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGG 14048 Query 8547 AGACTGGAGGACGCCAATCGGCCGCAGCTTCGCGTGAAACTCAGCGTGCCTT---GG--C 8601 || ||||| ||| | | || ||||| ||||||||| ||||| || | || | Sbjct 14047 AGCAGGGAGGCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACC 13988 Query 8602 TGAG---GTAACTAGTCAAATAAACACCGCGAAGGCCTCAGCACTGGGAATGGCTGGTGC 8658 |||| | | || || || || | || | | || |||| ||| | || | Sbjct 13987 TGAGTGAGCAGCTTGT---AT-----CCACTAAAGAGACGGCGCTGGAGATGACCGGCGT 13936 Query 8659 ATTTNNNNNNNNNNNNNNGACTGGTCATCTTATATCGCTGGCCGATGAATGGAGCTCTGT 8718 || | || || || | |||| || | |||| | || Sbjct 13935 CTTCGCCGGCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGT 13876 Query 8719 TAATGCCAGGCTAAAGCAGGCTTCCCAGTCGTCAGATGATTTCA---CGGAGTCCCAGCG 8775 || ||| | || ||||||||||| ||||| ||| || |||| ||| | ||| Sbjct 13875 GAACGCCCGCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTG---CAGAA 13819 Query 8776 GGCGCTGATGGATATTAGCCAGCGAACCGGAACCGCCTTCTCTGATAATGCGAGTCTTTT 8835 ||||||||||||| |||||||| ||||| || | || || ||||||| ||||| Sbjct 13818 ATCGCTGATGGATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTA 13759 Query 8836 TGCGCGTTCAGCCGCTTCTATGCGTGAATATGGCTACAGTTCAGAAGAGGTTCTGAAGGT 8895 ||||||||| || ||||| ||||| |||| || ||| | | | || || || ||||| Sbjct 13758 TGCGCGTTCCGCTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGT 13699 Query 8896 AACCGAGGCTATATCAACAGGGCTTAAGCTGTCAGGCGCAAGCGCGTCTGAAGCGAGT-- 8953 |||||||| |||||||||||||||||||||||||||| || ||||||| || Sbjct 13698 TACCGAGGCAGTATCAACAGGGCTTAAGCTGTCAGGCGCGAGT---TCTGAAGAAAGCAG 13642 Query 8954 -TCGGTAATCACGCAGTTCAGCCAGGCTCTGGCGCAGGGTGTTCTTCGAGGCGAGGAATT 9012 || || ||||| |||||||||||||| ||||||||||| || ||||| || ||||| || Sbjct 13641 CTCTGTTATCACCCAGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTT 13582 Query 9013 TAACTCCGTCAACGAAAACGGTGATCGAGTTATCCGTGCTCTTGCCGCAGGGATGGGTGT 9072 ||| | || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct 13581 CAACGCAGTTAACGAGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGT 13522 Query 9073 AGCTCGTAAAGATCTGAAGGCAATGGCCGATCAGGGGATGCTAACCGCAGATAAAGTTGT 9132 || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 13521 TGCCCGCAAAGACCTTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGT 13462 Query 9133 CCCGGCCCTGATAAGTCAACTTG 9155 || ||||||| || || |||| Sbjct 13461 GCCAGCCCTGACCAGCCAGCTTG 13439 Score = 149 bits (164), Expect = 2e-31 Identities = 971/1535 (63%), Gaps = 79/1535 (5%) Strand=Plus/Minus Query 14550 ACTCCAACTGAACAGCCCGATGATCTGCAGTCAGTTGCGAAGGCGAAAATTTTAATCGCC 14609 ||||| ||||||||| |||||||||| ||| | || || ||||| | | || Sbjct 7770 ACTCCGGTTGAACAGCCAGATGATCTGCTGTCTATCGCAAAATTAAAAATGCTGCTGGCT 7711 Query 14610 CTTGGCGAGGGCGAGTTCTCCGGGCAATT-AACCGGCAAAGATATCTACCTGGACGGAAC 14668 | ||||| ||| | || ||| ||| ||||| || | || |||||| ||| || Sbjct 7710 ATATCAGAGGGTGAGAT-TCAGGGTGATTTAACCGCGCAACAGATTTACCTGAACGACAC 7652 Query 14669 AGCGCTGGAGAACGCCGACGGCTCCCAAAACTTCAGCGGCGTTACGTGGGAATTTCGCGC 14728 ||| ||||| |||||| || | ||||||| |||||| |||||| | || Sbjct 7651 CCAATTGGCGAACGAAGACGGCACCTACAACTTCACCGGCGTAGTGTGGGACTGGCGTAA 7592 Query 14729 GGGAACGCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAGCGT 14788 || ||||||| || | |||||||||||||| || | ||| || ||| | || Sbjct 7591 AGGTACGCAGGACCAGACCTATATTCAGGGTATGCCTGAAGTCGATAATGAGCTTTCTGT 7532 Query 14789 AGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCTTTC 14848 || || ||| | || | |||||||| ||| |||||||||| | || Sbjct 7531 TGGGGTTGCAGTAACGCAGGCAATCGCCTGGACCCGCCAGTTTACCAATCTGACACTGGA 7472 Query 14849 AGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTTCAAACAGGA---AGACGACGGCGA 14905 || |||||| | || | | ||| | || | ||| | |||| | ||||| Sbjct 7471 TGCCGTTCGCATTAAGCTGAGCTTGCC---GGTTCAGTATCAGTATAAAGACAATGGCGA 7415 Query 14906 TCTGGTGGGTTACTCGGTCA---ATTATGCGATTGACCTGCAGACTGACGGCGGCACATG 14962 | |||| ||| | || | | ||||| ||||| || |||||||| || |||| Sbjct 7414 TATGGTCGGTACC---GTAACGCAGTATGCCATTGATCTCTCAACTGACGGTGGTTCATG 7358 Query 14963 GCAGACGGTACTCAATACCAGCGTGACCGGCAAAACGACGTCTGGTTATGAGCGCAGCCA 15022 | ||||| | | || | ||| ||||| ||||||| ||| ||||| || Sbjct 7357 GGTCACGGTGGTGGACGGAAGGTTTGACGGTAAAACTACGTCTGAATATCAGCGCGATCA 7298 Query 15023 CCGTATCGATTTACCGCAGGCTGGCAGCAC-CTGGACAATACGTCTGCGTAAGATTACCT 15081 || ||||| ||||| | || || | |||| || | | |||||| |||||| Sbjct 7297 TCGCATCGACTTACCTAAAGCCA-CATCTGGCTGGTCAGTCAGGGTGCGTAGAATTACCG 7239 Query 15082 CTGACGCCAACAGCG-CGAAGATCGGCGACACGATGATGCTGCAGAGCTTCACCGAGGTG 15140 |||| || || | | ||| | || | | | | ||| | ||||| Sbjct 7238 CTGATTCCT-CATCATCAAAGCTTATTAACGCTTTCAAAGTTTTTTCGTTCGCAGAGGTC 7180 Query 15141 ATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGACTCAAGC 15200 || ||| ||||||||||||||| || ||||||||||| || |||| | || | || Sbjct 7179 ATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAGGTTGATGCCAGT 7120 Query 15201 CAGTTCAACGGCTCTATTCCTCAAATTTCA--TGCGAACC----GCGCGGCCGCGTTATC 15254 ||||||| ||| || | | |||| | | ||| | || | ||||| | ||| Sbjct 7119 CAGTTCAGCGG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGCGGCTG-GTT--- 7066 Query 15255 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15314 ||||| || ||||| || |||| | || | |||| ||| || ||| |||| Sbjct 7065 CGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACGTGGCAGGGTGAT 7006 Query 15315 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15374 || || | || | || |||||||| || |||||||| || |||||||| | | | Sbjct 7005 TTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTGGTGCTGGATAAA 6946 Query 15375 CGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAATGGACGCTTTAT 15431 || || | ||| ||| | || ||| | || || || || ||| |||||| Sbjct 6945 ATATTTGGTATGGGGACGCGTGT---CGATGCCACCATGATCGACAAGTGGGAGCTTTA- 6890 Query 15432 CAGG-TTGCTCAGTATTGTGATCAGATGGTGCCAGACGGCAAAGGGGGCAACGGTACAGA 15490 ||| || | ||||| || |||||||||||| | |||||| ||| || ||||| | Sbjct 6889 CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG-AACGG-----A 6836 Query 15491 ACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCG 15550 || || | |||||| ||||||| ||| ||| | | | || || || || || ||| Sbjct 6835 GCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTATACCGTTCTGAA 6776 Query 15551 TGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATTGTGGCCCT 15610 || |||| || || ||||||||||| || | ||||||| |||||| | | | Sbjct 6775 GGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCCAGATTTTCGTCAA 6716 Query 15611 GGCTGACATGCCGC---------------GC------GATGTTGATTACAGCTA-TACGC 15648 |||||| |||||| || |||||||||| | || |||| Sbjct 6715 TGCTGACGTGCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATTTCGTTTACCACGC 6656 Query 15649 GCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACA 15708 ||| ||||| ||| || ||||||||| || || ||| | |||| ||||||| Sbjct 6655 -CGCAAACGTCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACAAAAATCGCTACA 6597 Query 15709 CCACAGCGCTGGTTTCA--TGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAGCC 15766 || || | | | || ||||| || ||| |||| |||| | ||| | | ||| Sbjct 6596 CCTCATGCCAG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGGACACCGTAGAGGG 6539 Query 15767 GGTATTTGAGCAGGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCAT 15826 || | || | ||||| ||| |||||| | | | || | || || || Sbjct 6538 CGTTTACGATTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAGCCTCACGGCTAT 6479 Query 15827 CGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAA 15886 ||||||||| ||| ||||| | || |||||||||| |||||| ||||| Sbjct 6478 CGGCTGCACGTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCATTCTCTCCAATGC 6419 Query 15887 CAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCT- 15945 ||| ||| | ||||| || | ||||| ||||| || | ||||| | || ||| Sbjct 6418 CAAAGATGGTACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC-TATCCCCGCTG 6360 Query 15946 ACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCG 16005 | ||||||| ||||| ||| | | ||| ||| | |||||||||||||| Sbjct 6359 AAATCATCGGTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCGGCCGCATCAGTT 6300 Query 16006 CCGTTAACGG---TCGCGTTATCAAACTTGACCGC 16037 | ||||| || |||||| | ||| |||||| Sbjct 6299 CTGTTAATGGCCTGCGCGTT---ACACTCGACCGC 6268 Score = 134 bits (148), Expect = 4e-27 Identities = 321/471 (68%), Gaps = 22/471 (5%) Strand=Plus/Minus Query 40398 AATCATCGCCGCGCGCTTGAGTGGGCAGCAGAACAAACCTGCCGGGTAGTGGTGTTGGAA 40457 ||||| |||||||| | || ||||| || | || |||||||| || | ||||| Sbjct 23630 AATCACCGCCGCGCTATCGAATGGGCCGCTCAGCAGGATTGCCGGGTGGTTATCATGGAA 23571 Query 40458 GACGACGCACTGCCAGTACATGGATTCGCCGAAAAGGTAACGTACTGGCTGGCGCGCTTC 40517 || || ||||||| || |||| ||| |||| ||||||| |||||| | ||| Sbjct 23570 GATGATGCACTGCTGGTCGATGGGTTCACCGATAAGGTAAAAGCCTGGCTTAACAGGTTC 23511 Query 40518 CCTGACGACATGCTGAGCTTTTATCTCGGTACCGGCCGACCGCCGCAGTATCAGAAAGAG 40577 |||||||| | ||| || ||||| || || |||||||| || ||||||||| || Sbjct 23510 CCTGACGATCTCCTGTCATTCTATCTGGGGACTGGCCGACCACCACAGTATCAGTCTGAA 23451 Query 40578 ATTGCCGGAATGCTGGTGGAATCAGAC-AGAGTAA-ACGCTGATTACCTTGTTCTTAACA 40635 | || || ||| | || ||| || | | ||| || ||| | | | || Sbjct 23450 GTAGCGACAAAGCTTATCGATAGTGACCAGCGCCAGACG--GACTACATCACCATGAGCA 23393 Query 40636 AACTGATTCACGGCGTATGTTATAGC---CCTCCTCAGGGCAG-GCTGGCGCGCATGCTT 40691 ||||| |||||||| || || ||| |||| ||| | | | || | || ||| Sbjct 23392 GGCTGATACACGGCGTCTGCTACAGCATTCCTCATCATCGTATTGATGATGTGC-TGCGG 23334 Query 40692 AACGCATGGAATAAAACGCTGGCAGCTGATTACGCCGTCGGTGAGGC--ATT-CGGTGGC 40748 || |||| ||| | | ||||||| || || || ||||| || ||| ||||| Sbjct 23333 --CG-ATGGGATAGCAGCAAGCCAGCTGACTATGCAGTAGGTGATGCGTATTGCGGTGAT 23277 Query 40749 CGGGTGATTTATCCGTGTTACTCGCTGGTGGATCACGCTGACCTCCCGACGGTTGAGCGT 40808 || || || ||||| ||||| || ||||||||||||||||| ||||| |||||||| Sbjct 23276 ---GTTATCTACCCGTGCTACTCACTTGTGGATCACGCTGACCTGCCGACTGTTGAGCGG 23220 Query 40809 CACCCTGACAAC--GAACCGAGGACGGAACGCCGCCGCGCATGGAGACTGG 40857 |||| |||||| ||| | | || || |||||| | || |||||||||| Sbjct 23219 CACCAGGACAACCAGAAAC--GCACAGAGCGCCGCAGGGCGTGGAGACTGG 23171 Score = 96.9 bits (106), Expect = 9e-16 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 6108 GGCGTCCATATTCGTGGCGTTAACCCGCGC-ACCGGAAACAGCGATAACACGATGAAGGC 6166 ||||| |||||||||||| || || ||| | ||| ||||| || | ||||||||| | Sbjct 16043 GGCGTGCATATTCGTGGCAGAAATCC-CGCTAACGGCAACAGTGACACCACGATGAAAAC 15985 Query 6167 TAATAACCCGAGAAACGCCTTTTACTGGCGATTCGTTGAGCTGGGTACCGCGAACATGCC 6226 ||| |||| || |||||||||||||| || | ||| |||||| | || ||||| Sbjct 15984 GAATTCTCCGAACAATGCCTTTTACTGGCGTTTTCTGGAGGAGGGTACATCAAAGATGCC 15925 Query 6227 TGCACATCCGTTTGTGCGACCCGCTTACGATA 6258 ||| ||||| ||||| || || || | ||||| Sbjct 15924 TGCTCATCCTTTTGTCCGGCCAGCATTCGATA 15893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132757958507220