Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 seq4 107 2e-18 >seq1 Length=970878 Score = 161 bits (178), Expect = 1e-34 Identities = 341/499 (68%), Gaps = 16/499 (3%) Strand=Plus/Plus Query 146509 GGACTGAACAACGTGATGTAATCGTTTTTAATCAATCGTTCAATCATGAGGTCGTTAATT 146568 || ||||||| ||||| | ||| ||| | || || | | ||| || | ||| | Sbjct 158219 GGGCTGAACAGGGTGATATCTTCGCCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGC 158278 Query 146569 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 146628 || |||||||| || | ||| || | ||||| | |||||||| ||||||||||| Sbjct 158279 TGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGC 158338 Query 146629 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCACCGCCA 146688 || |||||| |||| | ||| |||||||| ||||| || ||| || ||||| |||||| Sbjct 158339 ACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCA 158398 Query 146689 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 146745 |||| |||||| |||||||| || || || | | || || || || |||| || Sbjct 158399 CGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATG---CTTGTAGAACGGG 158455 Query 146746 ATAACGCCTGTATG--ACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCAC-GATAC 146802 ||| ||| ||||| ||| ||||||| ||| |||| || |||| ||||| Sbjct 158456 ATACAGCCGGTATGGAACG--CTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGATAC 158513 Query 146803 ATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTTT 146862 || || || | ||| || |||||||| | || |||||| | ||||| || Sbjct 158514 -GACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAG 158572 Query 146863 ACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTGG 146922 ||||| || ||| || || ||||| | || || | || || || |||||||| Sbjct 158573 GTGGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGA 158632 Query 146923 CGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT--GACGTTTAG 146980 || || || || ||||| || | ||| ||||| || ||||| || || | |||| || Sbjct 158633 CGTGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTCGAG 158692 Query 146981 ATACGGCATTATAGAAACG 146999 || |||| ||||||||| Sbjct 158693 AT--CGCATCATAGAAACG 158709 >seq4 Length=447486 Score = 107 bits (118), Expect = 2e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 74898 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 74957 ||||||||||||| | |||| |||||||||| |||||| ||||||||||||| ||||||| Sbjct 299305 AATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 299246 Query 74958 AACCATCTGAGCTAAAGGGCC 74978 ||||| ||||||||| ||||| Sbjct 299245 AACCA-CTGAGCTAAGGGGCC 299226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540017804409560