Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 2e-16 seq1 86.0 1e-12 >seq4 Length=447486 Score = 98.7 bits (108), Expect = 2e-16 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 20132 CTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATTTTAGCTGCTAA 20191 ||||||||||||||||||||||||||| |||||||||||||||| | ||||| || Sbjct 299257 CTCATAATCGCTTGGTCGCTGGTTCAAACCCAGCAGGGGCCACCA-AATTTAGTCATAAA 299315 Query 20192 AT-CAGCTACTTATAGCCACTCTTCGGAGTGGCTTTTTTGTTTTCCGATTTC-AAGTGGC 20249 || || |||||| |||| | | | | || || |||||||| | ||||| |||||| Sbjct 299316 ATACATATACTTA-AGCCGCACATTGAAGCGGTTTTTTTGTATCTGAATTTCTGAGTGGC 299374 Query 20250 GATGAAATGGCGATGGATTTTC 20271 | | || ||||| || |||||| Sbjct 299375 GGTAAAGTGGCGGTGCATTTTC 299396 >seq1 Length=970878 Score = 86.0 bits (94), Expect = 1e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 14561 CCGTACAGTTATTGACAGAACTCCAAGGGGACGCGGGCGCGTCCCTCAATTCAAAAGCCA 14620 || ||||||||||||||||||||| || |||||||| ||||||| | ||||||||| ||| Sbjct 605880 CCATACAGTTATTGACAGAACTCCGAGAGGACGCGGTCGCGTCCTTAAATTCAAAACCCA 605939 Query 14621 GGTCAACGGC 14630 |||||||| Sbjct 605940 AATCAACGGC 605949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94476054058428