Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_019933.2 Length=43870 Score E Sequences producing significant alignments: (Bits) Value seq174 111 4e-20 >seq174 Length=42168 Score = 111 bits (122), Expect = 4e-20 Identities = 240/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 6552 CTGCGTCTGGCTCTGTTGCAGGCACAGCTGGCCGAGTTCCCGGCTACCGGTATTGTCCTT 6611 ||||| ||||| || ||||||| || |||| |||||||| | || ||||| Sbjct 17377 CTGCGACTGGCAATGCTGCAGGCGCAATTGGCGCGCTTCCCGGCGTCGGGCCACGTCCTG 17318 Query 6612 AACCCGGCAGATTGGGCCGGCATTGAACTCCTGAAGGACACTCAGGGCCGCTACATCCTG 6671 || | || ||||| | |||||| | ||| || | |||||||||||||||| Sbjct 17317 CACTTTACCGACTGGGCACGTATTGAATTGTCGAAAGATGAACTGGGCCGCTACATCCTG 17258 Query 6672 GGTAATCC-GCAGGGCACCCTGGCCCCAACTCTGTGGGGTCTGCCGGTTGTTGCAACTCA 6730 | ||||| || || || ||||||| || ||||| |||||||| || |||||| | Sbjct 17257 GCGAATCCTGCTCAGCTTACTA-CCCCAACACTCTGGGGCCTGCCGGTGGTGGCAACTGA 17199 Query 6731 GGCGATG--GCTG-TGGGCCAGTTCCTGACCGGTGCCTTTGATGCCGGTGCACAGGTCTT 6787 || | | | | || | |||||||| || || ||| | ||||||| ||| | || Sbjct 17198 AGCCGCGCAGTTCCTCGGTAAATTCCTGACTGGGGCGTTTAACTCCGGTGCTCAGTTGTT 17139 Query 6788 TGATCGCTGGGCCGCCCGCGTTGAGGTTGCCACCGAGAATCAGGATGACTTCATCAAGAA 6847 ||||||| || ||| ||| | | | | ||| || |||||||| ||||| Sbjct 17138 TGATCGCGAGGATGCCAACGTAGTTATCTCAAGCGAAAACGCCGATGACTTTGAGAAGAA 17079 Query 6848 CATGGTCACCATCCTGGCCGAAGAGCGCTTGGCTCTGGCGGTCTATCGTCCGGA 6901 |||| || | |||| ||||| ||| | || || ||||||||||||||||| Sbjct 17078 CATGATCTCAATCCGCTGTGAAGAACGCGTTGCGCTTGCGGTCTATCGTCCGGA 17025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140251791691696