Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq13 176 5e-39 seq3 120 3e-22 seq2 109 6e-19 >seq1 Length=970878 Score = 205 bits (226), Expect = 1e-47 Identities = 329/469 (70%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507 ||| | || || ||||| ||||| ||| | || ||||| || || || || |||||| | Sbjct 158682 AAAATCTCCCTGCCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGC 158623 Query 40508 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT--- 40564 ||||| | || || | || || || | || | ||||| ||||| Sbjct 158622 TCCTGTGTGCTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCC---ACCTCCAGC 158566 Query 40565 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGC 40624 || || ||||| ||| | || || ||||| || || || | ||||| || | ||| || Sbjct 158565 GCAATTGTGAAATATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGT 158506 Query 40625 GCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTG 40683 || |||| || || || |||||||| | ||||| || ||| || || |||| Sbjct 158505 GCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCGTTCCATACCGGCTGT-ATCCCGTTCTA 158447 Query 40684 GAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGC 40743 || ||| | || ||||| || || |||||||| ||||| ||||||||||| || || || Sbjct 158446 CAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGC 158387 Query 40744 AACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAA 40803 || |||| || || | |||||||||||| | |||| ||| |||||| |||||||||| Sbjct 158386 CACGCTGTTCTACCCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAA 158327 Query 40804 CAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTT 40863 | || || |||| |||||||| ||||| | || |||||||||||||| ||| || | Sbjct 158326 CCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAAGCT 158267 Query 40864 GATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCG 40912 ||||||| | ||| | |||| | || | || || ||||| || ||| Sbjct 158266 GATGTATCAGCGCCTGCTGAAAGGCGAAGATATCACCCTGTTCAGCCCG 158218 >seq13 Length=199142 Score = 176 bits (194), Expect = 5e-39 Identities = 148/182 (81%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 50851 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 50910 || ||||||||||||||| | ||||| ||||| ||||||||||||| || ||||| Sbjct 145509 GTTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGCCGCGAAACGCTGGAAGATGCA 145450 Query 50911 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 50970 ||| ||||||||||||| || || ||| | || ||||| ||||| || ||||| |||||| Sbjct 145449 GTTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGCGTTTCAGGCTATGCCGTGCGT 145390 Query 50971 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAGT 51030 ||||||||||| || ||||| ||||| |||||||| || || | |||||||| || ||| Sbjct 145389 TTTAACTCACTCACGCCTGAGCAGCAGCGCGACGTGATTACCCGTACCTTTACTGAAAGT 145330 Query 51031 CT 51032 || Sbjct 145329 CT 145328 >seq3 Length=630259 Score = 120 bits (132), Expect = 3e-22 Identities = 421/652 (65%), Gaps = 4/652 (1%) Strand=Plus/Minus Query 152157 AACGAAAACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGGT 152216 ||||| || || |||||||| || ||||||| | |||||||| ||||| || Sbjct 229964 AACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACGCAGCGCGATCTGCTGGCCGGG 229905 Query 152217 ATCGTTTCTAAACATATGGCGCGTAACCATATTCTACCGAAACATATTGTAGAGGCGCAT 152276 ||||| | ||||| || | | || || || ||| || | || |||||| Sbjct 229904 ATCGTGGCAAAACACTACGCACAGCAGCAGATCCTGCCGCGCGATGTGGTGCTGGCGCAC 229845 Query 152277 GATTCCGGTGATATTCATTATCACGATCTGGATTACAGCCCGTTCACCCC-ATACACTAA 152335 || ||| || || || ||||||||||| || ||| ||| ||| ||| || | || Sbjct 229844 GAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTC-AA 229786 Query 152336 CTGCTGTCTTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGA 152395 |||| || | || || ||||||||| | ||||| ||| ||||| || ||||| Sbjct 229785 CTGCATGCTGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCTGA 229726 Query 152396 TATCGAACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACA 152455 ||||| ||||||||||| |||| || || || | | ||| ||||||| ||| || Sbjct 229725 GATCGAGCCGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCGCA 229666 Query 152456 GATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAATGTCGATCAGGTGCTGGCCCC 152515 | | || || |||||||| || ||| || | | ||| | ||||||||||| Sbjct 229665 GGTCGCCAGCCATATTTACGGCGGCACCACCATTAACCGTATTGATGAAGTGCTGGCCCC 229606 Query 152516 TTACGTTGAAATGACGTACAACAAACACTTTAAAGA-TGCTGTTTGGTACGGGGTTCCTA 152574 | ||||| || || | || | | || ||||| || | | || Sbjct 229605 GTTTGTTGAGCAGAGCTATGCCCGGCA-TCTGGCGATTGCTGAGCAGTGGCAGATCCCGC 229547 Query 152575 AATCAAAACAGTATGCGATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCCAGTCAT 152634 | | | ||||||||| | || || || || | ||| || || ||||| Sbjct 229546 AGGCCGAGCAGTATGCGCGCCAGCGTACGGAGAAAGAGTGCTACGACGCCTTTCAGTCGC 229487 Query 152635 ACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACAATCA 152694 |||||||| || || ||| | || || || || || |||||||| |||||||| | Sbjct 229486 TGGAATATGAGGTGAATACCCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACCTTTG 229427 Query 152695 CTTTCGGTATGGGTACTGGTTGGCGCGAACGCATGATCCAGAAAGCGATTCTGAAAAACC 152754 ||| ||| |||| || | ||| | || |||| ||| | |||||||| |||| Sbjct 229426 GTTTTGGTCTGGGGACGGACTGGGCGGCCCGGCTGATTCAGCAGTCGATTCTGCTTAACC 229367 Query 152755 GTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTCCCAAAACTGGT 152806 | | |||||||||||||| ||| || | || ||||| |||||||| Sbjct 229366 GGCTGGCCGGACTGGGTAAAAATCGCAAGACGGCGGTGTTCCCTAAACTGGT 229315 >seq2 Length=722220 Score = 109 bits (120), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913 ||||| || ||||| | ||||| ||||| || ||| |||| || ||||||||| | Sbjct 515228 GAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGATGCGATG 515169 Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973 |||||||| || ||||| || || | || || || ||||| ||||| || ||||| ||| Sbjct 515168 GAACATCCAGAGAAATATCCGCAACTGACCATTCGCGTTTCCGGTTACGCTGTGCGCTTT 515109 Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTAC 51023 ||||||||||| || ||||| | || || || || ||||||| || Sbjct 515108 AACTCACTGACTAAAGAGCAGCAGCAGGATGTGATTACCCGAACCTTCAC 515059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557949176734520