Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq1 174 1e-38 >seq1 Length=970878 Score = 174 bits (192), Expect = 1e-38 Identities = 246/343 (72%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 76460 GAACGCCCAAGTCTCTACCCATGTTTCCAGGGT-GGTGTCGGATACGATCGGCAGAAGAA 76518 ||||||||| || || | ||| |||||||| || ||| | | | |||||| || Sbjct 156592 GAACGCCCAGGTTTCAATCCAGGTTTCCAGTTCAGGAATCG-AGATCAGCGGCAGCAGCG 156650 Query 76519 CTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGA 76578 | ||||||| | |||||||| | |||||||| || |||| |||||||||||||||| Sbjct 156651 CGACGTTCGGGCTGCGGCCCTGAATCGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGA 156710 Query 76579 TGAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGT 76638 | ||||| || || || ||||||||||| | ||| ||||| || || || | |||| Sbjct 156711 TAAAGATATGTTTTTCATGATCCGGCAGCGCCTGGTAATCGATGCGATCGCGTGAAACGT 156770 Query 76639 TAACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCG 76698 || ||||| || ||||||||||| | || |||||||| |||||||| || || | Sbjct 156771 CGACCTCTTCCGGACGCCAGAAGAAGGAGAGCTGCTTTTCGATCAGCTTTTCAAAGATGT 156830 Query 76699 CATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGGCTGAG 76758 ||| ||| ||||||||| |||| | ||||| | || |||| |||||||||| Sbjct 156831 CATATTTTTGCTGGTCGAAGCGCGCCACGTTTACGGACTGACCGAAAAACATCGGCTCTT 156890 Query 76759 TCAGGAAGTTGAATTTGTTTTGGTTGAAAGTGCTGTAAGACAT 76801 |||| | |||||| || ||||||| ||||| ||| Sbjct 156891 TCAGCTGATCATTTTTGTTCTGTGAGAAAGTGGAGTAAGCCAT 156933 Score = 140 bits (154), Expect = 3e-28 Identities = 257/368 (70%), Gaps = 8/368 (2%) Strand=Plus/Plus Query 74904 AGACCAACTGCCCGCATACGCTGGTCAGTGATATAGTCGATGTATCCGTCCAGCATACCT 74963 || || || ||| ||||||| | ||||| || || ||||| | || ||| || Sbjct 155969 AGGCCGACAGCCTGCATACGGATATTGGTGATGTACTCAATGTACTGGCAGAGAATATCT 156028 Query 74964 TTGTTCAGTCCAATCATCGACCCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTG 75022 |||||||| || ||||| || ||| | ||||||| | |||||| | ||||||||||| Sbjct 156029 TTGTTCAGGCCGATCATTGAGCCGCCGCTGAACAGATATTCTGCCC-ACTCTTTCTCCTG 156087 Query 75023 CACCGATGCGTCGATAAATCCCT-GTCGTGCTTCCTCGTGGCAATCTTCTGCCA-CACGG 75080 || | ||| | |||| || | | || | || |||| ||| | || | | | Sbjct 156088 CAGTGCTGCTTTCTTAAACAGCTCGAAGCACT-CTTCACGGCACTCTGCCGCAATCTCTT 156146 Query 75081 GCAAA-CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGGGTGCCGGA 75139 || | || | | || | |||| | ||| |||||||| | ||||||||||| Sbjct 156147 TCATCTCCGG--ATCGTCTTCACCGCTGCGCAGCAGGTTCAGCATGTGCTGGGTGCCGGT 156204 Query 75140 CAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATAATGTTGGTGTTGCCCAGCATTAC 75199 || |||| |||||||| || |||||||| | ||| || |||| ||||| ||| | Sbjct 156205 CAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATTGCCTTCCATCAG 156264 Query 75200 CCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGGATCGCTTCCAG 75259 | | |||||| |||| |||||||| ||||| ||||| || ||||| |||||||||||||| Sbjct 156265 CTCACGCTCAGCGAACGCGAAGGAACAGGCGAAGCTGACATAGAAACGGATCGCTTCCAG 156324 Query 75260 TGCGTTGA 75267 || |||| Sbjct 156325 CGCATTGA 156332 Score = 105 bits (116), Expect = 6e-18 Identities = 263/396 (66%), Gaps = 14/396 (4%) Strand=Plus/Plus Query 77778 CGAGGGGGCTCGAATCCGTTGGTGGAGTTGGTGATTTGGCTGGATGTCTCGCAAGGCATC 77837 || || ||||| | |||||||||| |||| ||| || || || || | |||||| Sbjct 157376 CGCGGAGGCTCAATACCGTTGGTGGCATTGGAGATCTGCGACGAGGTTTCAGACGGCATC 157435 Query 77838 ATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATGGCGATGTCGATACGCAGCTTTTCC 77897 | || ||||| || ||||| |||||||| || | || || |||||| ||||| Sbjct 157436 AGCGCAGACAGGGTCGAGTTGCGCAGGCCGTGCGTTTTAATCTCTTCACGCAGGCTTTCC 157495 Query 77898 CAATCCATCTTCAGTTCCGCAGTGTGGAGTCCATCCACTTCTTTCTTGTAACGGTCGATC 77957 || || | | ||| | || || | |||| ||||||||||| |||||| Sbjct 157496 CAGTCGAGATGCAGCGGTTCGTTGCTGATCGCGTCCAGATCTTTCTTGTAGGTGTCGATA 157555 Query 77958 GGTAGAATACCCTGAGAGTAGGTGGTCTCGTGGAAGAGATCACATTTACCCAGTTCTTTT 78017 || ||||| ||||| | |||||||| || | ||| || ||| | ||||| Sbjct 157556 GGCAGAATGCCCTGCGCATAGGTGGTTTCATTGAACCACGGGCAGGCACCTTGCTCTTTC 157615 Query 78018 GCCAGGTCAACCGATGCTTCCAGCAGGTAATACTGGAATGCTTCAGCCAGTTCGTG---A 78074 ||||| ||| || |||| ||||||||||||||| | |||||| || || || Sbjct 157616 GCCAGCTCATTTGAGGCTTTCAGCAGGTAATACTGAATCGCTTCA--AAGGTCTTGTGCG 157673 Query 78075 ACAG--CATT--CGCTGAACGAGGATCGCTGTACTTCAGACCACGCTTCGCCAGGTAATA 78130 ||| |||| ||||| |||| ||| || |||| |||||||||| || || Sbjct 157674 TCAGGCCATTGGCGCTG-----CCATCGGAGTAGCGCACACCATGCTTCGCCAGATAGTA 157728 Query 78131 AGCCAAGTTCGTCCAGCCAATACCCAAAGTACGGCG 78166 || |||| | ||| ||||||| |||||| || Sbjct 157729 GGCGTAGTTGATGACGCCGATACCCAGAGTACGACG 157764 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 79680 TACAGCATTTTGTTCAACTGGAGTCCGTAGTCCACGTGGCGAGCACGGGTGCTCTCAGTA 79739 |||| || ||||| | ||| | || ||||||| ||| || | ||| ||| ||| | Sbjct 158261 TACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACA 158320 Query 79740 CCTCGGTTGTTCTTCAGCACAATCAGACTTTCGAAATCCCAGTGCCACATCGGGTAGAA 79798 || ||||||||||||||||| | ||| ||||||| ||| ||||||||||||||||| Sbjct 158321 CCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAA 158379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455352545359160