Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq162 102 2e-16 seq3 91.5 4e-13 >seq162 Length=45224 Score = 102 bits (112), Expect = 2e-16 Identities = 133/180 (74%), Gaps = 12/180 (7%) Strand=Plus/Minus Query 251486 CACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAG 251545 ||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| || | Sbjct 4609 CACCGTGAGAGATCATGCAATCACGCTCCATTTCTCCGAAACGAAGACCACCATCTCGCG 4550 Query 251546 CCCTACCCTCGGCAGGCTGACGAGT-GAGAT-TAACCATAGGACC----GATGGAGCGGC 251599 | |||||| | || || || || |||| | | | |||||| | | ||| | Sbjct 4549 ATCGACCCTCCACGGGTTGTCGGGTCAAGATCTGA--AGAGGACCGCGAGCTCGAGAGTG 4492 Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || ||| || || ||||| ||||||||||| |||||| ||| ||||| | | ||| Sbjct 4491 GATTTTG----TCGTTGACCATGTGCTTGAGACGTTGGTAGTATGTTGGACCAAGGTAGA 4436 >seq3 Length=630259 Score = 91.5 bits (100), Expect = 4e-13 Identities = 188/275 (68%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 289102 ACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATG 289161 ||||||||||| || | ||| ||| ||||||| ||||| |||||| |||| | || | Sbjct 202872 ACACGGGATGCACCGACACCGACAAACATTTCAACAAAGTCAGAACCGGAGATGGTAAAG 202813 Query 289162 AATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGT 289221 || | || || |||||||| || | || | ||||| | || ||||| || || ||| Sbjct 202812 AAAGGCACCTTCGCTTCGCCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTACCCGGT 202753 Query 289222 GGTCCCTCTAATAGAACTCCCTTTGGTA-CTTTTGCCCCAGCAGACTTATATTTCTCAGG 289280 || ||| | | ||||| || ||||| | ||| |||||| | | || | Sbjct 202752 GGCCCCACCATCAGAACGCCTTTTGGAATCTTACCGCCCAGCTTCTGGAAACGGCT--TG 202695 Query 289281 GCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTA 289339 |||| | | |||| || | || ||| ||||| ||| || || ||||| ||||||| Sbjct 202694 GCTCACGCAGATATTCCACCAGCTCAGCAACTTCATCTTTCGCTTCGTCACAACCTGCTA 202635 Query 289340 CATCAGCAAAAGTAATATTAATATCGTTCTTGCGT 289374 | || || ||||| | ||||| | | |||| ||| Sbjct 202634 CGTCGGCGAAAGTGGTTTTAATCT-GGTCTTCCGT 202601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471697495544353