Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq1 253 2e-62 seq3 174 2e-38 >seq1 Length=970878 Score = 253 bits (280), Expect = 2e-62 Identities = 426/611 (70%), Gaps = 18/611 (3%) Strand=Plus/Minus Query 41654 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41713 || ||||| || ||| |||| || || || || || |||||||| | || || || Sbjct 158670 CCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTGCTG 158611 Query 41714 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 41770 || || | || || |||| || | || || ||||| || || ||||| Sbjct 158610 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCC---ACCTCCAGCGCAATTGTGAAA 158554 Query 41771 TATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGTTCT 41830 ||| | || || ||||| || |||||| | |||||||| | ||| || ||| |||| Sbjct 158553 TATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGC 158494 Query 41831 AAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 41890 || || || |||||||| | ||||| ||| |||||||||| || ||| | ||| Sbjct 158493 CCGATTCGCGGCGGTGAAGCGTTCCATACCGGCTGTATCCCGTTCTACAAGCATTTCCAG 158434 Query 41891 ACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTAT 41950 || ||||| || |||||||| || || || |||||||| || || || ||| ||| || Sbjct 158433 ACCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTAC 158374 Query 41951 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAA 42010 ||||| |||||| ||||| | |||| ||||||||| ||||| |||||| ||||||||| Sbjct 158373 CCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAA 158314 Query 42011 AACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAACGT 42070 |||||| | |||||| |||| ||||| |||||||| ||| | |||||||| | || Sbjct 158313 GGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAAGCTGATGTATCAGCGC 158254 Query 42071 TTGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGTTGCTAACGATCGTCTG 42127 || |||| ||| | ||||| |||||||||| |||| | ||| | | ||| Sbjct 158253 CTGCTGAAAGGCGAAGATATCACCCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 158200 Query 42128 TATGATGCGTTCTATCAAGCGGATCAGACTGAATTCGAAGAACTGTATACCAGCCTTGAA 42187 ||||| || |||| || || ||||| ||| || || || ||||||| ||| Sbjct 158199 TATGACGCATTCT-TC--GCCAATCAGGATGAGTTTGAGCGCCTCTATACCAAATATGAG 158143 Query 42188 AAAGACCCGACTGTACGCAAGAAACGTATTAAAGCGGTAGATCTGTTCCAGTTGCTTGCA 42247 | || | || | |||||| | ||| |||||||||| ||||| ||| || | Sbjct 158142 CAGGATCAGAGCATCCGCAAGCAGCGTGTTAAAGCGGTCGATCTCTTCTCACTGATGATG 158083 Query 42248 CAGGAACGCGC 42258 ||||||||||| Sbjct 158082 CAGGAACGCGC 158072 Score = 116 bits (128), Expect = 4e-21 Identities = 208/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486 ||||||||||||| ||||| || || || ||||||||||| |||||||| || || | Sbjct 156825 TTTGAAAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGTCCGGAAGAGGTCGACGTT 156766 Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAA---ATCATTTTCGAT 43543 || || || || | || | ||||||| ||||||||| ||| || || Sbjct 156765 TCACGCGATCGCATCGATTACCAGGCGCTGCCGGATCATGAAAAACATATCTTTATC--- 156709 Query 43544 TCTAACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCA 43603 |||||| | ||||| || || |||||| | |||||||| ||| |||| ||| | || Sbjct 156708 AGCAACCTGAAGTATCAGACGCTGCTGGATTCGATTCAGGGCCGCAGCCCGAACGTCGCG 156649 Query 43604 TTTCTCCCGATTGCCTCTGATGTATCAA-TGGAAACGTGGATCGAAACATGGGCGTTCAG 43662 | || ||| | ||| ||| | || ||||||| ||||| ||||| ||||||||| Sbjct 156648 CTGCTGCCGCTGATCTC-GATTCCTGAACTGGAAACCTGGATTGAAACCTGGGCGTTCTC 156590 Query 43663 TGAAACAATTCACAGTCGCAGTTATACGCACATTCAGCGCAACCTGCATATCGATCCGGC 43722 || || |||||| || ||| || ||||| || ||| | || ||||||||| Sbjct 156589 AGAGACGATTCACTCCCGTTCTTACACCCACATCATCCGTAACATTGTTAACGATCCGGC 156530 >seq3 Length=630259 Score = 174 bits (192), Expect = 2e-38 Identities = 1162/1833 (63%), Gaps = 77/1833 (4%) Strand=Plus/Minus Query 152160 GCCCGTTCATACATTGAGTATCGCCACGATCGCGACATTGCCCGTGAACAGAAAAGCAAG 152219 ||||| | |||||||| || |||||||||||||| | ||||| || | | ||| || Sbjct 230075 GCCCGCGCCTACATTGAATACCGCCACGATCGCGATGTCGCCCGCGATCGTCAGAGCCAG 230016 Query 152220 CTGT-TCTCTGATATCTCCGGCATGGTGAACCTGTCCAACAAAGAGATCACCAACGAGAA 152278 | || | | || ||| |||| | | | |||| | | | |||||||| Sbjct 230015 TTACATCAC-GCCATTCGCGGACTGGTCGATCAGACCAATGCGGCGCTGCTGAACGAGAA 229957 Query 152279 CGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGGTATCGTAG 152337 || |||||||| |||| | || |||||| ||||||||| ||||||| || ||||| | Sbjct 229956 TGCCAACAAAGACAGCAAAGTGAT-CCCGACGCAGCGCGATCTGCTGGCCGGGATCGTGG 229898 Query 152338 CGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGCATGATTCCG 152397 | || || | ||| | | || ||||| ||| || | || ||||| || || Sbjct 229897 CAAAACACTACGCACAGCAGCAGATCCTGCCGCGCGATGTGGTGCTGGCGCACGAGCGCG 229838 Query 152398 GTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAACTGCTGTC 152457 | || ||||||||||||||||| ||||| ||| ||| ||| |||||| | Sbjct 229837 GCGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTCAACTGCATGC 229778 Query 152458 TGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGGACATTGAAC 152517 || | || |||||||| |||||| |||||||| |||||||| || || || || || | Sbjct 229777 TGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCTGAGATCGAGC 229718 Query 152518 CGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACAGATTGCCT 152577 ||||||||||||||| || ||||| | | ||||||||||| ||| ||| | ||| Sbjct 229717 CGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCGCAGGTCGCCA 229658 Query 152578 CTCACCAGTACGGCGGGACAACCTTT--GCGAACGTGGATAAAGTGCTGGCTCCATACGT 152635 || |||||||| || ||| || || | | ||| |||||||||| || | || Sbjct 229657 GCCATATTTACGGCGGCACCACCATTAACCGTA--TTGATGAAGTGCTGGCCCCGTTTGT 229600 Query 152636 CGAAATGACATTCTTCAAACATCTGCACGA-TGCTGAACATTACGGTATCGAACACTATA 152694 || || | | |||||| ||| |||||| || | || | || | | Sbjct 229599 TGAGCAGAGCTATGCCCGGCATCTG-GCGATTGCTGAGCAGT--GGCA--GATCCC--GC 229547 Query 152695 ATGATTATGTGTATGCGATTGAAAAGACTGAAAAAGATGTG-TATGATGCGTTCCAGTCC 152753 | | | ||||||| | || || ||||| ||| || || || || ||||| Sbjct 229546 AGGCCGAGCAGTATGCGCGCCAGCGTACGGAGAAAGA-GTGCTACGACGCCTTTCAGTCG 229488 Query 152754 TATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACCCCGTTTGTTACCATC 152813 || ||||| || || ||||| || || |||||||| || || |||||||| ||| | Sbjct 229487 CTGGAATATGAGGTGAATACCCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACCTTT 229428 Query 152814 ACTTTCGGTACTGGTACGAGCGATTATGAACGCATGATCCAGAAAGCGATCCTGAAAAAC 152873 ||| ||| || ||| | | || |||| ||| | |||| ||| ||| Sbjct 229427 GGTTTTGGTCTGGGGACGGACTGGGCGGCCCGGCTGATTCAGCAGTCGATTCTGCTTAAC 229368 Query 152874 CGTATTCGCGGCCTTGGTAAAGAGGGTATTACTCCGGTATTCCCGAAACTGGTTATGTTC 152933 || | ||| || |||||| | | | || |||| ||||| |||||||| | | Sbjct 229367 CGGCTGGCCGGACTGGGTAAAAATCGCAAGACGGCGGTGTTCCCTAAACTGGTGTTCAGC 229308 Query 152934 ATGGAAAAAGGAATTAACCTTGATCCAGAGGATCAAAACTATGACATCAAACAACTTGCC 152993 || |||| | |||| | | || || || || ||||||||||| || Sbjct 229307 ATTCGCGAAGGCGTCAACCGCCGGGCGGGCGACGTTAATTACGATATCAAACAACTGGCG 229248 Query 152994 CTGGAATGTGCTTCGAAACGCATGTACCCAGATATC----ATTA-GCGCATCTAATAACC 153048 ||||| || || || || ||||| || || ||| |||| | || | | | Sbjct 229247 CTGGAGTGCGCCAGCAAGCGGATGTATCCCGACATCCTCAATTACGATCAGGTGGTTAAA 229188 Query 153049 GCCGTATCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAGCG 153108 | |||| || | |||| | | | || ||||| || || ||||||||| ||| Sbjct 229187 G-----TCACCGGCT----CGTT--TAAAACCCCAATGGGCTGCCGTAGTTTCCTTGGCG 229139 Query 153109 TGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAACCTTGGTGTGGTGA 153168 | | |||| || ||||| | | |||| || || || || || | || || | | Sbjct 229138 TTT---ATGAAGAGAACGGCGAGCAGATTCATGAGGGCCGCAACAATATCGGGGTAATCA 229082 Query 153169 CAATCAACCTCCCGCGCATTGCGATCGAAGCTGAAGCACAGGAAGATGAAGACGCACACG 153228 | ||||| |||||||| || | ||||| | || | ||||||| ||| | Sbjct 229081 GCCTGAACCTGCCGCGCATCGCACTGGAAGCGG--GC----GGTGATGAAG-CGCGC--- 229032 Query 153229 ACGCATTCTGG-CGCATCCTTGATGAACGTCTGGATCTGTGCTTTG-AAGCCCTGATGAC 153286 |||||| ||| | || |||| || ||| | ||| ||| | || |||||||| Sbjct 229031 -----TTCTGGACGC-TGCTCGATGCGCGACTGCAGCTG-GCTAAGCGGGCGCTGATGAC 228979 Query 153287 TCGTATCGAAAGCCTACGCGGTG-TTAAAGCCAGTGTTGCGCCGATCCTGTACACAGAAG 153345 || | | | || | | | ||||| | || ||||| ||||| || | |||| Sbjct 228978 GCGGGTGGCGCGGCT-GGAGAAGACCAAAGCGCGCGTCGCGCCCATCCTCTATATGGAAG 228920 Query 153346 GTGCTTTTGGTGTCCGACTGAAACCGGATGATGAAATTCTGGAAC--TGTTCAAAAATGG 153403 | || | ||| || || ||||| ||||||||||| | || | | ||| ||||| Sbjct 228919 GCGCCTGTGGCGTTCGGCTGAATGCGGATGATGAAGT--CGGTCCTATTTTCCGTAATGG 228862 Query 153404 GCGTAGCTCTATCAGCCTTGGTTATATCGGACTACATGAAACACTG---TTGATGTTCGG 153460 ||| || | || || |||||||| || |||||||| ||| | | ||| Sbjct 228861 CCGTGCGTCGCTGTCGCTGGGCTATATCGGCCTGCATGAAACCCTGAATGCGCTCAGCGG 228802 Query 153461 ATCTGGACAACACCCATTCGAT----CGGGTTGGCTCCCAGAATTTCGGTAAACATGTTC 153516 | || || || | |||| ||| | || | | || |||| | | | Sbjct 228801 CGGTCATCAGCATCCTTACGATGACGCGGCTCTGCGCGCCAAA--GGGGTAGAGA--TCA 228746 Query 153517 TGGAACACCTGAAAAACAAAACCGAACGTTGGAAAGCCCAAACAGGCTTTGGATTCAGCC 153576 | | ||||| | ||||| || |||||||| ||||||||| ||| ||||||| Sbjct 228745 TTGCTTACCTGCGCGATGCCACCGAGCGCTGGAAAGCAGAAACAGGCTATGGGTTCAGCC 228686 Query 153577 TGTATTCAACCCCTGCTGAATCTCTCTGTCACCGTTTCTGCAAACTTGATTATCAGAAGT 153636 | || || || || ||| || |||| |||||| |||||| | ||| Sbjct 228685 TTTACAGCACGCCAAGCGAGAATCTGTGCGACCGCTTCTGCCGTCTTGATGCGGCGCAGT 228626 Query 153637 TCGGAAGCATCAAAGGGATCACTGATAAGGGTTGGTATACAAACAGTTTCCATCTTGACG 153696 | || | ||| | || || ||||| | || || ||||| |||||||| |||| Sbjct 228625 TTGGCCTGGTGCCAGGCGTTACCGACAAGGGCTACTACACCAACAGCTTCCATCTCGACG 228566 Query 153697 TTGACCGCAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCCGATTATCATTACATTG 153756 |||| ||||| | || | ||| |||||||||| |||||| |||| | | Sbjct 228565 TTGAGAAGAAGGTCAATCCTTACGACAAAATCGACTTTGAAGCGCCCTATCCGCCGCTGG 228506 Query 153757 CGACTGCTGGACATATCAGCTATGTAGAATTTCCTGATATGAAAAACAACCTGGAAGCAC 153816 ||| || ||| ||| | || | |||| || || || | ||||||| | || | Sbjct 228505 CGAATGGCGGATTCATCTGTTACGGCGAATACCCGAATGTGCAGCACAACCTCAAGGCGC 228446 Query 153817 TTGAAAAAGTCTGGGATTAC-GCGATGGAAAAACTGGACTACTTCGGAACTAACCTTCCG 153875 | || | |||||||||||| || | || || ||| | ||| || || ||| Sbjct 228445 TGGAGGATGTCTGGGATTACAGCTA-CGACCGCGTGCCCTATTACGGCACCAATACCCCG 228387 Query 153876 GTCGATAAGTGCTTTGTATGTGGCTCTGATGACGAGTTCACGCCTA-CAGAAGACGGTTT 153934 | ||| |||||| | || |||| | | ||||||||| || ||| | ||| || Sbjct 228386 ATTGATGAGTGCTACGAGTGCGGCTTCAACGGCGAGTTCACCTGTACCAGCCG-CGGCTT 228328 Query 153935 CCACTGTAAGCACTGCGGTAATCACGATCCGGC 153967 | |||| | | ||||| || ||||||||||| Sbjct 228327 CACCTGTCCGAATTGCGGCAACCACGATCCGGC 228295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563753514599880