Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq3 102 1e-16 >seq1 Length=970878 Score = 141 bits (156), Expect = 1e-28 Identities = 268/391 (69%), Gaps = 4/391 (1%) Strand=Plus/Minus Query 63684 CCAACCCCGATCATGGCAGGTGTTCGTACGCCAACTCGACAATTTAGCTCATGTGTTAAA 63743 || || || |||||| | || || || || ||||| || || || ||||| ||||| Sbjct 158670 CCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGCTCCTGTGTGCTG 158611 Query 63744 ATCGAATCTGGCGACTCTCTGCATTCAGTCAACAAAGTAGCCGAAGCAATCATCAACTAT 63803 ||||| | |||||| ||| | || ||||| || ||||| | || ||| Sbjct 158610 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCCACCTCCAGCGCAATTGTGAAATAT 158551 Query 63804 ATCAGTAAACGTGCTGGTATCGGTGTTAATGGCGGTGCTATTCGTGCTGAAGGCTCGGTT 63863 || | | ||||| || |||||| | || | |||| ||| ||||| ||| Sbjct 158550 GTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTGCGCTGGGCAGCCCG 158491 Query 63864 GTTCGAGCAGGTGAAA--TTCGACACACTGGTGTAATCCCATTCTGGAAACACTTTCAGA 63921 |||| | |||||| ||| | || | | |||| |||| |||| || || || |||| Sbjct 158490 ATTCGCGGCGGTGAAGCGTTCCATAC-CGGCTGTA-TCCCGTTCTACAAGCATTTCCAGA 158433 Query 63922 CTGCTGTGAAGTCATGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACC 63981 | || |||||||| ||||| || || || |||||||| || || || ||||| |||| Sbjct 158432 CCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACC 158373 Query 63982 CGATTTGGCATTTAGAAGTTGAAAAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAG 64041 |||| |||||| | ||| | |||| || ||||||||||||||||| || ||||||| Sbjct 158372 CGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAG 158313 Query 64042 AAAACCGTATTCGTCATCTTGACTACAGTGT 64072 ||||| | ||||| | ||||| |||| Sbjct 158312 GCAACCGCGTGCGTCACATGGACTATGGTGT 158282 >seq3 Length=630259 Score = 102 bits (112), Expect = 1e-16 Identities = 454/714 (64%), Gaps = 19/714 (3%) Strand=Plus/Minus Query 172084 GGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATTCAACTGTATG 172143 ||||| || || | ||| ||| | || ||| || || || ||| |||||||| ||| Sbjct 229838 GGCGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTCAACTGCATG 229779 Query 172144 CTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGCTGAGATCGAA 172203 || || ||| | ||||||||||| ||||| || |||||||| |||||||||||||| Sbjct 229778 CTGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCTGAGATCGAG 229719 Query 172204 GAGCCAAACAGTATCGCGACTGCTGCGACTATTGTCACTCAGATCATACAACAAGTAAGT 172263 ||| || ||||| || || | | | | |||||||| || || Sbjct 229718 CCGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCGCAGGTCGCC 229659 Query 172264 AGTCACATTTACGGCGGCAACACTGTTAATAGAATTGACGAAGTTCTAGCACCATATGTT 172323 || || ||||||||||||| ||| |||| | ||||| ||||| || || || | |||| Sbjct 229658 AGCCATATTTACGGCGGCACCACCATTAACCGTATTGATGAAGTGCTGGCCCCGTTTGTT 229599 Query 172324 CGTAAGTCGTATTACAAATGGCTTGAGGTTGGTCGCGAAGAG---CATCCCGATTCAGAC 172380 || ||| | || | | ||| | | | || | |||||| ||| | Sbjct 229598 GAGCAGAGCTATGCCCGGCATCTGGCGATTGCT-GAGCAGTGGCAGATCCCG---CAGGC 229543 Query 172381 TCAAAAGCAGCTATCTTTGCACGTAAACGTGTCGAGAAAGAAACGTACGACGCTTTTCAA 172440 ||||| | ||| || | ||| |||||||| |||||||| ||||| Sbjct 229542 ---CGAGCAG-----TATGCGCGCCAGCGTACGGAGAAAGAGTGCTACGACGCCTTTCAG 229491 Query 172441 ACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAGACGCCATTCACGACG 172500 || | || ||| | || || || |||| || | ||||| |||||||| || || Sbjct 229490 TCGCTGGAATATGAGGTGAATACCCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACC 229431 Query 172501 ATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTTATTCAGAAATGCATTCTGCAA 172560 || || ||||| || || |||| | ||| |||||| | | ||||||| Sbjct 229430 TTTGGTTTTGGTCTGGGGACGGACTGGGCGGCCCGGCTGATTCAGCAGTCGATTCTGCTT 229371 Query 172561 AATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTCCCGAAACTTGTATTC 172620 || || | || || || || || | || || ||| | ||||| ||||| || ||| Sbjct 229370 AACCGGCTGGCCGGACTGGGTAAAAATCGCAAGACGGCGGTGTTCCCTAAACTGGTGTTC 229311 Query 172621 ACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGT--GTTACGGCATTAAGAAGC 172678 | || || || || ||| | ||||| ||| ||||| || || | | Sbjct 229310 AGCATTCGCGAAGGCGTCAACCGCCGGGCGGGCGA--CGTTAATTACGATATCAAACAAC 229253 Query 172679 TTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGCTATGAAAAGCTAG 172738 | || || || ||||| || ||||| |||||||| || ||| | | || || || | | Sbjct 229252 TGGCGCTGGAGTGCGCCAGCAAGCGGATGTATCCCGACATCCTCAATTACGATCAGGTGG 229193 Query 172739 TAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCATTCTTAGGCG 172792 | || || ||| |||||| | || ||||| || ||| ||| | |||| Sbjct 229192 TTAAAGTCACCGGCTCGTTTAAAACCCCAATGGGCTGCCGTAGTTTCCTTGGCG 229139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 ||||||| | || || || || || || || |||||||| |||||||| || || Sbjct 228716 TGGAAAGCAGAAACAGGCTATGGGTTCAGCCTTTACAGCACGCCAAGCGAGAATCTGTGC 228657 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 || || ||||| ||||||||| | | ||| || | | | || | | ||||| Sbjct 228656 GACCGCTTCTGCCGTCTTGATGCGGCGCAGTTTGGCCTGGTGCCAGGCGTTACCGACAAG 228597 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | |||||| || ||| ||||| | ||||| ||||| || ||||| | ||| || Sbjct 228596 GGCTACTACACCAACAGCTTCCATCTCGACGTTGAGAAGAAGGTCAATCCTTACGACAAA 228537 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATATGCAAACGGCGGTTTCATTTGCTATGCAGAG 173460 || ||||||||||| | || || | || || ||||| ||||| || || | || Sbjct 228536 ATCGACTTTGAAGCGCCCTATCCGCCGCTGGCGAATGGCGGATTCATCTGTTACGGCGAA 228477 Query 173461 TTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA 173510 | |||||| ||| |||| |||| | || || ||| |||||||| Sbjct 228476 TACCCGAATGTGCAGCACAACCTCAAGGCGCTGGAGGATGTCTGGGATTA 228427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791844154288040