Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 8e-13 seq33 84.2 1e-11 >seq2 Length=722220 Score = 87.8 bits (96), Expect = 8e-13 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 68244 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT-TATAGCTGTACGAGTTC 68302 |||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| Sbjct 611108 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTGTAAGGCTGTGCGGGTTC 611167 Query 68303 GAGTCTCG 68310 |||| || Sbjct 611168 AAGTCCCG 611175 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 68162 CCTTAGCTCAGCAGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAATCCA 68221 ||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||| Sbjct 220816 CCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCT 220875 Query 68222 GTAGGGTGTACCA 68234 |||||| |||||| Sbjct 220876 GTAGGGCGTACCA 220888 >seq33 Length=114970 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 12435 TGGCTATTCATCTGGACGATGTACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAG 12494 |||| |||||| | | ||| || | || || |||| || || || ||||| || | Sbjct 72911 TGGCGATTCATATTGCCGACCCCGATCTGGCCGCTGTGATCCTGCCGCGCTCAGGCCTTG 72970 Query 12495 GCCATAAACATGGTGTAGTGCTTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGG 12554 ||||||||||||| | ||||| || ||||| ||||||||||| || || ||||||| Sbjct 72971 GCCATAAACATGGCATCGTGCTGGGCAACCTGGTGGGTCTGATTGACTCCGACTATCAGG 73030 Query 12555 GTGAACTTATGGTAAGCCTCTGGAATCGC 12583 | | || ||||| ||||||||||| Sbjct 73031 GACAGCTGATGGTCTCGGTCTGGAATCGC 73059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231518027669195