Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq1 300 4e-77 seq174 147 6e-31 >seq1 Length=970878 Score = 300 bits (332), Expect = 4e-77 Identities = 648/964 (67%), Gaps = 4/964 (0%) Strand=Plus/Plus Query 23390 ATTTTTTACTTCAATATAGATTCTACCTATATATTCTCCGAGAACACCAATCCCGATCAG 23449 |||||| ||| || || || | || |||||||| || || || |||||||| || || Sbjct 786022 ATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCCAGCACGCCAATCCCAATAAG 786081 Query 23450 TTGCACTCCACCCAAGAAA-AGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGT 23508 || || ||||| |||||| || | || || || | ||||| || || | || |||| Sbjct 786082 CTGAACGCCACC-AAGAAACAGCACGGAAACCAGAATAGAGGGGTAGCCTGGCACCGGGT 786140 Query 23509 TACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAA 23568 ||||||| | | | || | |||||||| ||||||| ||| | | || | Sbjct 786141 TACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATATAGAAAAGCTAGCGAGGCCA 786200 Query 23569 CAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTT 23628 | | || || | ||| | ||| | |||||| |||| || || || || | || | Sbjct 786201 CCAGAAAACCCAGATATGACCAGATGCGAAGTGGAACCGTAGAGAATGAGGTCAGTCCCT 786260 Query 23629 CCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACGCTCTG 23688 |||| || |||||||| | |||||||| ||||| | ||| || | ||||| | Sbjct 786261 CCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACTGTGGCCCGCGATCCGCTCAG 786320 Query 23689 CGCGTACATATTCCACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGA 23748 || |||||||| |||| ||| |||| || || ||||| ||||| || || ||||| | Sbjct 786321 TACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCAACTCAGAATCCCCTTCATAA 786380 Query 23749 AAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAA 23808 | ||||| ||| |||| ||| ||||| ||||| ||||| ||||| ||||| || || | Sbjct 786381 AGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAACTTCACGCGACATCAGCCGGA 786440 Query 23809 AATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAGAACC 23868 |||| |||||||| || || |||| || ||| || |||| || | ||| || |||| Sbjct 786441 AATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCTGTTATGCAGTTTGTAAAACC 786500 Query 23869 ACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCA 23928 | || || || ||||| || | ||||| | | ||| || || ||||| | Sbjct 786501 AGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCTGTCCATCCGCTTGGCAAGAA 786560 Query 23929 CCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTGGGTCTT 23988 | || |||||||| ||| ||||||| | || | | ||||||||| || ||||| | Sbjct 786561 CAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGGGATAACAGTGATGGGGTCCT 786620 Query 23989 GCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATA 24048 | | || |||||||| || || || ||||||||| |||| || | || ||||| | Sbjct 786621 GTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGCGGCTTCCAGGCCGGCAAACA 786680 Query 24049 AGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGCGGGTCTGAAA 24108 || ||||| || || || || || |||| ||||| || || ||||| || Sbjct 786681 GCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCTAAGTACCAGCGGATCGCTCT 786740 Query 24109 CAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAA 24168 | ||| | |||| | | | || |||||| | || || |||| | || |||| Sbjct 786741 GACTCAGTTGGGTAATCAGCGCATGCGTTGCATCTGTGCTGCCATCATCAACAAAAACAA 786800 Query 24169 TTTCTACTTCATATGGCT-TCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGT 24227 | || || | | |||| || | ||| ||| | |||| | ||| |||| ||| Sbjct 786801 TCTCAACCTGCCA-GGCTGCCAGCGCTTCATATTTTCTGACCGCGTCATAAAAAAGAGGG 786859 Query 24228 ATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAA 24287 || | || |||||||| || || || || || ||||| ||||||||| | | ||| Sbjct 786860 ATGACCTCCTCTTCATTAAATACCGGTACCACCAGAGAGATTTTCATTATTCTCCTTTAA 786919 Query 24288 AGACAATGAACTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGTGATAA 24347 | || || || ||| | | || || ||| |||||||||| || || ||||||| | Sbjct 786920 ATACGATAAAGCGGGAAAAAAGAAAGCCACACGCCAGACTGATAGCCGATGAGGTGATCA 786979 Query 24348 GAGT 24351 | || Sbjct 786980 GCGT 786983 >seq174 Length=42168 Score = 147 bits (162), Expect = 6e-31 Identities = 601/919 (65%), Gaps = 49/919 (5%) Strand=Plus/Minus Query 29722 AACCACAGGAACAGGAGGTGAACCGTGGGTAAGCATCACTGGAAAGTAGAAAAACAGCCT 29781 |||||||| || | | | |||||||| | || | |||||| |||||||||| || || Sbjct 34721 AACCACAGTAAAGAGGGCTTAACCGTGGATCAGAAGCACTGGCAAGTAGAAAAGCAACCA 34662 Query 29782 GAGTGGTACGTGAAAGCTGTCAGAAAAACTATCGCAGCGTTGCCgggggggTACGCTGAA 29841 | ||| ||| || | | ||| || ||| || | ||||| ||||| || ||| Sbjct 34661 GCATGGCTGGTGGCGGCAATTAAAAAGACCATCTCAAGTCTTCCGGGTGGGTATGCAGAA 34602 Query 29842 GCTGCTGACTGGCTGGATGTAACAGAGAACGCATTATTTAACCGCCTTCGTGCCGATGGC 29901 || ||||| ||| ||| || || || | ||||| || ||||| |||||| || ||||| Sbjct 34601 GCAGCTGAATGGTTGGGCGTGACTGAAGATGCATTGTTCAACCGTCTTCGTACCAATGGC 34542 Query 29902 GATCAGATTTTCCCGCTGGGATGGGCAATGGTTTTACAGCGTGCTGGTGGCACTCACTTC 29961 |||||||||||||| |||| ||||| ||||| | || | || | | ||| | | Sbjct 34541 GATCAGATTTTCCCAATGGGCTGGGCGATGGTCCTGCAACAGGCAAGCGACACCAAGCAC 34482 Query 29962 ATTGCTGATGCTGTGGCGCAGTCTG-CAAATGGCGTCTTTGTGTCTCTTCCTGACGTCGA 30020 || ||| | || ||| | | || | |||| ||||| || | ||| | | | || Sbjct 34481 ATCGCTAACGCGGTGTC-CCTTCAGTCAAACAGCGTCAACGTTCCGCTTGTGGGCATTGA 34423 Query 30021 GGATGTGGACAACGCCGATATTAACCAGCGTCTGCTGGAAGTCA-TTGAACAGATCGGCA 30079 |||||| || ||||| ||||| || ||||| ||| ||| ||||| |||| |||||| | Sbjct 34422 GGATGTTGATAACGCAGATATCAATCAGCGACTGATGG-AGTCAGTTGAGTGGATCGGTA 34364 Query 30080 GTTATTCAAAACAGATTCGTTCAGCAATTGAAGACGGTGTAGTGGAACCGCATGAGAAGA 30139 | || | ||||| ||||| || ||||| ||| | || | ||| | Sbjct 34363 AGCACTCTGCCTACATTCGAAAAGCAACTGCTGACGGGGTAATTGATGCTGCGGAG-CGT 34305 Query 30140 CAGCA-ATTAACGACGAGCTG-TATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACT 30197 |||| ||| | || || | | |||| || | ||| |||||||||| | || Sbjct 34304 GAGCAGATTGAAGA-GAACAGCTATCAGGTCATGGCTAAGTGGCAGGAGCATCTGACGCT 34246 Query 30198 GGTCTACAAAATCTTTTGCATTTCAGAAA--GTAATGACGCCCGCGAGTGTGCAGCTCCG 30255 | | || | |||||| |||||| || | ||| |||| | |||||| | Sbjct 34245 GCTGTATCGCGTGTTTTGCCCGCCAGAAAAGGTGA--ACG-CCGCAGGATTGCAGCCCGC 34189 Query 30256 GGCG-CCGTGGCGTGT-------CGTGACTGTGGAGAAACTAA-CGCATGAACAGTTTAA 30306 |||| || ||| | |||| ||||||| |||||| ||| ||| || ||||| Sbjct 34188 GGCGTTCGATGCGACTAAATCAACGTG--TGTGGAG-AACTAATCGCGTGATCAATTTAA 34132 Query 30307 CAACACACTACCGTCGCT--CGCAACT-GATTGCGCTTCCTGTACCGGGTGG----AAAA 30359 | || | || | | | ||||| | |||| || || | | ||||| | Sbjct 34131 C--CAGATTATCAGGGTTACCGCAATTCCGTTGC-CTCCCGTCAGCTGGTGGCCGCTTCA 34075 Query 30360 GCGAAGGTGGAGTATTGCTATGCAGTGAATGTACCAGGTG--ACAGGGAAATTGTAACCC 30417 || | | | | | |||| | ||||||||||| | ||| | || || | || Sbjct 34074 GC-AGTGAGCCGCTGCGGTATGTGCTTAATGTACCAGGCGGCGCAGAGGAA--GTTAACC 34018 Query 30418 ACAGCTTTGCAGAGTGGGCTGTGGGTGATTTCAACCGGC---AGAAGGAGACAGTCCTTT 30474 ||||||||| || ||||||||||| ||| |||| || ||||| ||| | | Sbjct 34017 ACAGCTTTGTTGACTGGGCTGTGGGCGATGCTAACCAGCGAATGAAGGCGAC---CAAAT 33961 Query 30475 GCGACAAGTTAACCGCTGGTTCAAAGATCACTACGGAGTGCCCGTCAGAGTCATTCGTTG 30534 |||| || || ||||| ||| |||| | ||| | || || | |||||||| || Sbjct 33960 GCGAGAACTTGACCGCATCTTCCGAGATAAGCGCGGCATCCCTGTGCGGGTCATTCGCTG 33901 Query 30535 GGAGCCGGAAACACAACGAGTTATCTACCTCCGTGAAGGCTATGAGCAT---GAGTGCTT 30591 |||||| || | | || ||||||||||| ||||| |||||| ||| |||||||| Sbjct 33900 GGAGCCAGAGAACGACCGGGTTATCTACCTGCGTGACAACTATGAACATGGCGAGTGCTT 33841 Query 30592 CAGCCCGCTCGAACAGTTT 30610 ||| | |||||| |||| Sbjct 33840 CAGTTCTCTCGAAAGGTTT 33822 Score = 141 bits (156), Expect = 2e-29 Identities = 215/306 (70%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 34934 GATCCGGAGTCGCCGGAGTCTTTTATGTTACGCCCAAAACGTCGCCGCTGGGTTAATGAA 34993 || ||||| || || || || || ||| ||||| || ||| ||||||| | ||| Sbjct 29515 GACCCGGAATCACCAGAATCATTCATGAAGCGCCCCAAGCGTAAGCGCTGGGAAAGTGAG 29456 Query 34994 AAGTACACGCGCTGGGTTAAGACGCAGCCGTGTGCATGTTGTGGAAAGCCTGCTGATGAT 35053 || || || | ||||| || ||||| |||| |||||||| || || ||||| ||| Sbjct 29455 AAATATACAAGATGGGTAAAATCGCAGACGTGCGCATGTTGCGGCGTGCAGGCTGACGAT 29396 Query 35054 CCCCACCACCTGATAGGCCACGGTCAGGGGGGAATGGGTACAAAAGCGCATGATCTCTTT 35113 || || ||| | || || || || |||||||||||||| || || ||||||||| | ||| Sbjct 29395 CCTCATCACATCATCGGACATGGACAGGGGGGAATGGGAACGAAGGCGCATGATTTATTT 29336 Query 35114 GTGTTGCCTTTGTGCAGAAAGCATCATGACGAGCTGCATGCGGATACCGTGGTATTTGAA 35173 ||| | || | |||||| |||||| || || ||||| ||||| | |||||| Sbjct 29335 GTGATACCGCTATGCAGAGCGCATCACGATGAACTGCACCGGGATATGAGAGCGTTTGAA 29276 Query 35174 GAGAAGTATGGCTCCCAGCTGGAGCTGATATTTCGTTTTATCGATCGTGCGCTGGCAATT 35233 | ||| || ||| ||| | |||||| | || | || |||||| ||| | ||| | Sbjct 29275 GCGAAATACGGCAGTCAGATAGAGCTGCTGTTCAGGTTCCTCGATCACGCGATTGCAGTC 29216 Query 35234 GGCGTG 35239 || ||| Sbjct 29215 GGAGTG 29210 Score = 95.1 bits (104), Expect = 3e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41356 GCGAAAACCGTTGACCACATCATTCCTAAAGCGCATGGCGGCACTGATGCCGACCGTAAT 41415 || || || ||||||||||||||||| ||||| ||||| || || |||| |||| | || Sbjct 22939 GCTAAGACGGTTGACCACATCATTCCGAAAGCACATGGGGGTACCGATGACGACAGCAAC 22880 Query 41416 CTGCAGAGTCTGTGCTGGCCGTGTCATAAGGCGAAGACGGCCCGTGAACGGTTGAAGTGA 41475 || ||| | ||||||||||||| || ||||| ||||| ||| | || | || || ||| Sbjct 22879 CTTCAGGCTTTGTGCTGGCCGTGCCACAAGGCAAAGACAGCCAGAGACAGATTCAAATGA 22820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132588371334386