Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq575 217 2e-50 seq12 100 3e-15 seq344 96.9 4e-14 seq6 89.7 6e-12 seq1 89.7 6e-12 seq19 87.8 2e-11 >seq575 Length=9735 Score = 217 bits (240), Expect = 2e-50 Identities = 345/491 (70%), Gaps = 19/491 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 2532 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 2473 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 2472 TAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 2413 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || |||||||| | ||||||||||||||||||| || ||||||||||| ||||| || Sbjct 2412 ATACCGCCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 2353 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 2352 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 2293 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || ||| || | || ||||| || ||| | Sbjct 2292 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGAC 2233 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 2232 TGCAAG-ACGCGC------------TCAATGTCGTGA---CCGTGGATGCCGACGGCGAC 2189 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| || || || ||| |||| |||| || | | || ||||| Sbjct 2188 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 2130 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGG 1630543 | || | || ||| |||||||||| || | ||||||||||||| | || || Sbjct 2129 AGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATGACGG 2070 Query 1630544 CGGCGTCGAGG 1630554 || || |||| Sbjct 2069 CGCTGTTGAGG 2059 Score = 116 bits (128), Expect = 5e-20 Identities = 290/449 (65%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||||||| | |||| | |||| || || ||| Sbjct 2982 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 2923 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | || ||| ||||||| |||| |||||| | || ||| || ||| Sbjct 2922 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 2863 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGG 1628331 | ||| || | | || || |||| | || ||||||| | || |||||| Sbjct 2862 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 2803 Query 1628332 CCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGG 1628391 |||| || || |||| ||| ||||| ||| Sbjct 2802 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGG 2743 Query 1628392 CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATA 1628451 ||||| || |||| || || ||||| | ||| ||||| ||| | | | || ||| Sbjct 2742 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 2683 Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 || || || |||| || || | ||||| || || || || |||||||||||| Sbjct 2682 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 2623 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAG 1628571 |||||||| ||||| || | |||| | |||||||||||||||||| |||||| Sbjct 2622 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 2563 Query 1628572 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 2562 GCGAAGGCTCCGGGACGCTTGTTGCCACC 2534 Score = 102 bits (112), Expect = 1e-15 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || | |||||| || ||||||| ||||||||||| Sbjct 4132 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 4073 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || | ||| ||||| |||||||||||||| || | ||| | | Sbjct 4072 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTTGGG 4013 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||| ||||| || |||||| | ||| | || ||||| | Sbjct 4012 CTCGAC-AAGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGGA 3954 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || |||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 3953 CAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 3895 Query 1627220 CG 1627221 || Sbjct 3894 CG 3893 >seq12 Length=200095 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 20559 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 20618 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 20619 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 20677 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 20678 CTTTGAGATTGG 20689 >seq344 Length=20868 Score = 96.9 bits (106), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 19904 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 19963 Query 1254403 ---TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 ||| ||| | |||| || ||| || || || ||| || |||||| || | Sbjct 19964 TAGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGCACGCTTCGATGGTGATGCGCTCAA 20020 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 || |||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 20021 AGATATCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 20080 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 20081 GGTGGACTTGCTTCAACACCTTG 20103 >seq6 Length=280608 Score = 89.7 bits (98), Expect = 6e-12 Identities = 113/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 1726684 ATGCGGCTGG-GCG-GCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTG 1726741 ||| |||||| ||| |||||||| | || || | || || ||| | || |||||| Sbjct 138566 ATGTGGCTGGCGCGCGCGGCGCGAATCGCATCCACGGCAATCTGTACGTTACCATCGGTG 138507 Query 1726742 CCGTTCTTGAAGCCGA-TGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCT 1726800 ||||| || ||||||| || ||| | || ||||| ||||| |||||||| | |||||| Sbjct 138506 CCGTTTTTAAAGCCGACCGGGCAG-GAGAGGGCCGATGCCATTTCGCGGTGGATCTGGCT 138448 Query 1726801 CTCGGTCGTGCGCGCGCCCACGGCGCCCCA 1726830 ||||| ||||| ||||| | |||||||| Sbjct 138447 TTCGGTGGTGCGTGCGCCAATCGCGCCCCA 138418 >seq1 Length=970878 Score = 89.7 bits (98), Expect = 6e-12 Identities = 122/165 (74%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 18082 TTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCG-TCGGCTGCATCATCGACGG 18140 ||| | || || |||||||||||||| || |||| ||| | ||||| ||| | ||||| Sbjct 92124 TTTCGAGTAACGACCTTTGGCGAGTCCCA-TGGGCTTGCGCTGGGCTGTATCGTTGACGG 92182 Query 18141 CGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCG 18200 ||||||||| |||| || ||| |||| || || || |||| | | | ||||| || || Sbjct 92183 CGTGCCGCCAGGCATCCCGCTGACCGAAGCGGATATTCAGCATGACCTCGATCGCCGTCG 92242 Query 18201 ACCGGGC-CAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATC 18244 || ||| || |||| | |||||| |||| |||||| |||| Sbjct 92243 TCCTGGCACATCGCGC-TATACCACGCAGCGCCGCGAGCCGGATC 92286 >seq19 Length=154254 Score = 87.8 bits (96), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 20309 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 20368 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| | ||||| || | |||||| | |||||| || | Sbjct 20369 TCGTCGCCTTGTGGTTGT---ATTGCGCGAGCTTGGACGCCTCGAGGGTGATGCGCTCAA 20425 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 20426 AGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCCTTGTTCGAGATACCCGTGTCGG 20485 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || || | | ||| ||| Sbjct 20486 GGTGAACTTGTCTCAACACTTTG 20508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106616530033973