Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq13 170 2e-37 seq795 84.2 2e-11 seq4 82.4 8e-11 >seq13 Length=199142 Score = 170 bits (188), Expect = 2e-37 Identities = 160/201 (80%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 61347 TTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACG 61406 || ||| || || || | ||| ||||||||||| ||||| || || || | |||||||| Sbjct 145333 TTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACG 145392 Query 61407 AACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 61466 ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||||| |||||| Sbjct 145393 CACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGC 145452 Query 61467 ATCTTCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAAC-TT 61525 |||||| | ||||| ||| ||||| ||||||| |||||||||||||||||| Sbjct 145453 ATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACACG 145512 Query 61526 TAACTGTAGGCTTGGTTTCAA 61546 || ||| ||| ||| |||||| Sbjct 145513 TACCTG-AGGTTTGATTTCAA 145532 >seq795 Length=5257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || |||| |||||| | ||||| || ||||||| | || |||||||||| Sbjct 4016 TGGTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCA 3957 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 3956 ACTGAGCTAAGCCGGC 3941 >seq4 Length=447486 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 74605 AATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCT 74664 ||||||||| |||| || || | ||||| || ||| |||||||||||||||| |||||| Sbjct 299305 AATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 299246 Query 74665 AACCAATTGAGCTATAGGGCCA 74686 |||| | ||||||| |||||| Sbjct 299245 AACC-ACTGAGCTAAGGGGCCA 299225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554311066396640