Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq1 123 4e-23 seq3 98.7 2e-15 >seq1 Length=970878 Score = 123 bits (136), Expect = 4e-23 Identities = 290/431 (67%), Gaps = 10/431 (2%) Strand=Plus/Minus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 ||||| |||| | ||||| ||| | || | ||||| || || ||| | ||||| Sbjct 158706 TTCTATGATGCGATCTCGACGTTTAAAATCTCCCTGCCGACGCCAATCATGTCTGGCGTA 158647 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 || ||||| ||||| ||||| || || ||||| ||| || | |||||| || | Sbjct 158646 CGCACCCCAACACGTCAGTTCAGCTCCTGTGTGCTGATCGAGTGCGGCGACAGCCTGGAC 158587 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGT 78807 || ||||| | | | ||||||| | || | | ||||||| || |||||| Sbjct 158586 TCCATCAACGCCACCTCCAGCGCAATTGTGAAATATGTCTCTCAGCGTGCCGGCATCGGT 158527 Query 78808 GTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAGATTCGT- 78864 | |||| |||| || ||||| |||||| | |||| ||||| ||| Sbjct 158526 ATCAACGCCGGTCGTATCCGTGCGCT--GGGCAGCCCGATTCGCGGCGGTGAAG--CGTT 158471 Query 78865 -CACACTGG-TGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTC 78922 || || || |||| | || |||| || || || || || ||||| || || ||||||| Sbjct 158470 CCATACCGGCTGTA-TCCCGTTCTACAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTC 158412 Query 78923 AAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTG 78982 | || || || ||||| || || || || || |||||||| ||||| | ||| | | Sbjct 158411 AGGGCGGCGTTCGTGGCGGCGCAGCCACGCTGTTCTACCCGATGTGGCATCTGGAAATCG 158352 Query 78983 AAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTG 79042 ||| ||| | || |||||||||||| |||||||||| ||||| | ||||| | | Sbjct 158351 AAAGCCTGCTGGTGCTGAAGAACAACCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGG 158292 Query 79043 ACTACAGTGTA 79053 |||| ||||| Sbjct 158291 ACTATGGTGTA 158281 >seq3 Length=630259 Score = 98.7 bits (108), Expect = 2e-15 Identities = 247/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 186905 AAAGAGAATGCAAATAAAGATTCGAAAGTAATCCCTACAATGCGTGACTTAGTAGCTGGC 186964 || |||||||| || ||||| ||||| ||||| || ||| || | | || || Sbjct 229964 AACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACGCAGCGCGATCTGCTGGCCGGG 229905 Query 186965 ACAGTGTCGAAACATTACGCACTTGAAGACTATC-TACCGAAGCATAT--TGCAGATGCA 187021 | ||| | ||||| ||||||| | || ||| | ||| || | ||| | ||| Sbjct 229904 ATCGTGGCAAAACACTACGCACA-GCAGCAGATCCTGCCGCGCGATGTGGTGCTGGCGCA 229846 Query 187022 CATATCGACGGCGATATTCATTTTCATGACCTTGACTACAGCCCATTATTCCCGCAATTC 187081 | | || |||||| || || | ||| || || |||||| ||| || |||||| ||| Sbjct 229845 CG-AGCG-CGGCGAGATCCACTATCACGATCTCGACTACTCCCCTTTCTTCCCGATGTTC 229788 Query 187082 AACTGTATGCTTATTGATATCAAAGGCATGTTTGAAGGCGGTTTCAAAATGGGTAATGCT 187141 ||||| ||||| || ||| | ||||||||| | ||||||||||||||| |||||| Sbjct 229787 AACTGCATGCTGATCGATCTGAAAGGCATGCTGACCAACGGTTTCAAAATGGGCAATGCT 229728 Query 187142 GAAATCGAAGAACCAAACAGTATTAGCACTGCTGCCACTGTTGTAACTCAGATTATTCAG 187201 || ||||| || || || ||| || || | || | ||||| || | Sbjct 229727 GAGATCGAGCCGCCTAAATCGATCGCCACCGCCACCGCCGTGACGGCGCAGATCATCGCG 229668 Query 187202 CAAGTAAGTAGCCATATCTACGGCGGTAACACGATCAATAGAATCGACGAAGTCCTAGCA 187261 || || |||||||| |||||||| | ||| || || | || || ||||| || || Sbjct 229667 CAGGTCGCCAGCCATATTTACGGCGGCACCACCATTAACCGTATTGATGAAGTGCTGGCC 229608 Query 187262 CCTTATGTT 187270 || | |||| Sbjct 229607 CCGTTTGTT 229599 Score = 96.9 bits (106), Expect = 5e-15 Identities = 232/350 (66%), Gaps = 1/350 (0%) Strand=Plus/Minus Query 188168 TGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGT 188227 ||||||| | || ||||| || ||||| || ||||| || ||||| || ||||| Sbjct 228716 TGGAAAGCAGAAACAGGCTATGGGTTCAGCCTTTACAGCACGCCAAGCGAGAATCTGTGC 228657 Query 188228 GATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATCAATGACAAA 188287 || || ||||| ||||| || | | | | || | | |||| | | ||||| Sbjct 228656 GACCGCTTCTGCCGTCTTGATGCGGCGCAGTTTGGCCTGGTGCCAGGCGTTACCGACAAG 228597 Query 188288 GACTATTACACAAACTCGTTTCACTTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAA 188347 | ||| ||||| ||| || || | ||||| ||||| || || || | || ||| Sbjct 228596 GGCTACTACACCAACAGCTTCCATCTCGACGTTGAGAAGAAGGTCAATCCTTACGACAAA 228537 Query 188348 ATTGATTTTGAAGCTGCATACCCAATTCATGCAAACGGTGGTTTCATCTGTTATGCTGAG 188407 || || |||||||| | || || | || || || || ||||||||||| | || Sbjct 228536 ATCGACTTTGAAGCGCCCTATCCGCCGCTGGCGAATGGCGGATTCATCTGTTACGGCGAA 228477 Query 188408 TTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGCGCGTATGGGATTATGCTTACACT 188467 | ||||||| ||| | ||| |||| | || ||| || |||||||| ||| Sbjct 228476 TACCCGAATGTGCAGCACAACCTCAAGGCGCTGGAGGATGTCTGGGATTACAGCTACGAC 228417 Query 188468 AAAGTAGCTTACTTCGGTACGAATACCCCGATTGATCAGTG-TACGTGTG 188516 || | || | ||| || ||||||||||||||| |||| |||| ||| Sbjct 228416 CGCGTGCCCTATTACGGCACCAATACCCCGATTGATGAGTGCTACGAGTG 228367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790093893641760