Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq1 233 3e-56 >seq1 Length=970878 Score = 233 bits (258), Expect = 3e-56 Identities = 380/542 (70%), Gaps = 10/542 (2%) Strand=Plus/Minus Query 87330 CTGACAGAGCTCAGAGCGCACGCAGTCATCCTTCGTGAACTCTACAACCCCAATGCGGGA 87389 |||||| ||| |||| ||||| || || || || ||| ||||| |||| | Sbjct 538698 CTGACACAGCGCAGAACGCACACAATCTTCTTTGCCGAAGCGTACAATGCCAAC-CATCT 538640 Query 87390 CGTGGTACT-GAAACGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAAT 87448 ||| | | ||||||| |||||||| | || || | ||||| || || | Sbjct 538639 CGTCCTCTTCGAAACGCGCCAGCGCGTCTGCGAGACCGGAAGGCACCCCAGCGGGCAAGT 538580 Query 87449 CACACTGAGCCACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGA 87508 | ||||| | | || ||||||||||| || || ||||| || ||||| || ||||||| Sbjct 538579 CGCACTGGGTAATATCGCCGTTAACAATGACCGTGACGTTTTCGCCCAGTCGGGTCAGGA 538520 Query 87509 ACATTTTCATCTGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCT 87568 ||||||||||||| || ||| |||||||| || |||||||| || || || || || | Sbjct 538519 ACATTTTCATCTGCGCGGCGGTGACGTTCTGCGCCTCGTCCAGAATTACCACAGCATTTT 538460 Query 87569 CAAACGTGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGC 87628 | || ||||| ||||||||||| ||||| || ||||| || ||||| | ||||| | Sbjct 538459 CGAAAGTGCGACCACGCATATAGGCGAACGGTGCAATCTCTACCTTGGCAATTTCCGGAC 538400 Query 87629 GCAAGCAGTACTGAAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGC 87688 ||| || || || | || | | ||||| ||||| |||| ||||| | |||||||| Sbjct 538399 GCAGACAATATTGCATAAAGGATGCGCCAAGACGTTTAACCAGAATGTCATAAACCGGGC 538340 Query 87689 GGAAATACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGG 87748 ||||||| || ||||||||||| || || || || | ||| ||||| | |||| | | Sbjct 538339 GGAAATAAGGCGCGAATTTCTCAGAAATATCGCCGGGAAGGAATCCCAGATCCTCATCTG 538280 Query 87749 ACTCTAAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGG 87808 || | || || ||||| ||||| || | || | || |||| | || || | | Sbjct 538279 CCTGCAGTACCGGGCGCGTAACGATAATCCTGTCGATATCCTTATTAATCAGGGCCTCAG 538220 Query 87809 CCGC--GTGCGCAGTTGA--CAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAG 87864 |||| |||| ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 538219 CCGCTTTTGCGGCACTGATCCAG----GTTTTACCGCACCCGGCTTCACCGGTTGCGAAG 538164 Query 87865 AT 87866 || Sbjct 538163 AT 538162 Score = 163 bits (180), Expect = 4e-35 Identities = 210/287 (73%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 93443 TGCTGGATACCCTTGACTCGAAGATTGACCAGTGGTACGCCAGTGGTTGTACTGGCGATG 93502 ||| ||||||||| || | || || ||||||||||||||| | |||| ||||||| Sbjct 309226 TGCAGGATACCCTCGATTGTAAAATCGACCAGTGGTACGCCTCACGCTGTAGCGGCGATG 309285 Query 93503 TCATCAAAGGGTATTGGTCGGGGCGTGCCGC-GGGCGTATGGGACCACATGACGGCGGTG 93561 | |||||| | ||||| || | | || |||| ||||||||||| || ||| | Sbjct 309286 TGATCAAATCGGGCTGGTCAGGTCA-GAAGCAGGGCAAATGGGACCACAGCACCGCGATT 309344 Query 93562 GAGCTGAGTAACTTTAACGTCCAGAACTGTCGGGGCGGAAAGGTACTGAACTTGCCGCGT 93621 |||||| |||||||| | ||| ||||||| || || || || || ||| ||||||| Sbjct 309345 GAGCTGTCGAACTTTAATGCGCAGTACTGTCGTGGTGGCAAAGTCCTCAACCTGCCGCGC 309404 Query 93622 TGCACGCAATCCTTCATCTGGAACGGCTGGATTGAGCACAGTGACAACCCAGGCGACCTG 93681 ||| || || | ||| |||||||||||||||||| |||| ||||| || || || Sbjct 309405 TGCGGCCAGTCGATTATCCATAACGGCTGGATTGAGCACTGTGATAACCCGGGTGATCTC 309464 Query 93682 TCGAACGGCCAGTGGATTATCAACGGACTGAACATCGAAGACTGTAA 93728 || ||||| ||||||||| || | | |||| | | || || ||||| Sbjct 309465 TCCAACGGTCAGTGGATTGTCGATGCGCTGAGCCTGGAGGATTGTAA 309511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698501186146760