Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq3 260 2e-64 seq1 134 2e-26 >seq3 Length=630259 Score = 260 bits (288), Expect = 2e-64 Identities = 801/1213 (66%), Gaps = 42/1213 (3%) Strand=Plus/Plus Query 27949 TCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGCGACG 28008 || ||||| | ||||| ||||| ||||| || ||||| | || || || || |||||| Sbjct 228886 TCATCATCCGCATTCAGCCGAACGCCACAGGCGCCTTCCATATAGAGGATGGGCGCGACG 228945 Query 28009 CTGGCTTTAA-CGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGATTTC 28067 | ||||| | | | ||| || | || || | ||||| || |||| | | | Sbjct 228946 CGCGCTTTGGTCTTCTC-CAGCCGCGCCACCCGCGTCATCAGCGCCCGCTTAGCCAGCTG 229004 Query 28068 CATACGTTCTTCCAGAAGATCCCAGAAACGCATAGGATTGCCATTTGAATCAAGAGCGAT 28127 || || | || || || |||||| ||| || || | || || ||||| Sbjct 229005 CAGTCGCGCATCGAGCAGCGTCCAGAAGCGCGCTTCATCACCGCCCGCTTCCAGTGCGAT 229064 Query 28128 TCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACC 28187 ||||||| |||||| ||| || || | ||||| ||||| ||||||| | | || Sbjct 229065 GCGCGGCAGGTTCAGGCTGATTACCCCGATATTGTTGCGGCCCTCATGAATCTGCTCGCC 229124 Query 28188 GTTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTA-C 28246 ||| || || | || | | |||||||||||| ||||||||| ||| |||| | | Sbjct 229125 GTTCTCTTCATAAACGCCAAG---GAAACTACGGCAGCCCATTGGGGTTTT-AAACGAGC 229180 Query 28247 CAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGC 28306 | || |||| ||| | || ||| || | || ||||| |||||||| || || |||| Sbjct 229181 CGGTGACTTTAACCACCTGATCGTAATTGAGGATGTCGGGATACATCCGCTTGCTGGCGC 229240 Query 28307 ATTCCAGAGCCAACTGTTTGATA-CG--AT--ACAGCGGATCAGTCGGGTTCAAGTTGTG 28361 | ||||| |||| ||||||||| || || || || | | | || |||| Sbjct 229241 ACTCCAGCGCCAGTTGTTTGATATCGTAATTAACGTCGC--CCGCCCGGCG---GTTGA- 229294 Query 28362 TCCGTCTTTCAGA--GC-GAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACC 28418 || ||| || || ||| |||||||| ||||| || | || | | | |||||| Sbjct 229295 --CGCCTTCGCGAATGCTGAACACCAGTTTAGGGAACACCGCCGTCTTGCGATTTTTACC 229352 Query 28419 AAGACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGT 28478 || || |||| || ||| || | | |||||||| | | ||||| || Sbjct 229353 CAGTCCGGCCAGCCGGTTAAGCAGAATCGACTGCTGAATCAGCCGGGCCGCCCAGTCCGT 229412 Query 28479 ACCAAGACCAAAGCCGAAGGT-ACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGT 28537 || |||||||| || ||||| ||| ||||| || || || || |||| |||||| || | Sbjct 229413 CCCCAGACCAAAACCAAAGGTGACA-AACGGCGTCTGGCCGTTGGCGGTGTGCAGGGTAT 229471 Query 28538 TGACCTCATACTCCAGACCTTGCATAGCATCATATACAGCTTTGCGAGT-CTTTGCAATA 28596 | |||||||| ||||| || | || || || |||| || | || Sbjct 229472 TCACCTCATATTCCAGCGACTGAAAGGCGTCGTAGCACTCTTTCTCCGTACGCTGGCGC- 229530 Query 28597 GCATATTGCTGTTGATCTGGAATTTTCCAGTAACGAGCTTCATCCAAGTGCTTTTCGTGT 28656 ||||| |||| | || || | ||| | ||| ||| ||| | | Sbjct 229531 GCATACTGCTCGGCCTGCGGGATCTGCCACTGCTCAGCAATCGCCAGATGCCGGGCATAG 229590 Query 28657 GTCATTTTAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAA 28716 || | |||| |||| ||||||||||| ||||| || || || ||| | ||||| ||| Sbjct 229591 CTCTGCTCAACAAACGGGGCCAGCACTTCATCAATACGGTTAATGGTGGTGCCGCCGTAA 229650 Query 28717 ATGTGACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTT 28776 || || || || || || |||||||| || || ||||||| | ||||| | || | Sbjct 229651 ATATGGCTGGCGACCTGCGCGATGATCTGCGCCGTCACGGCGGTGGCGGTGGCGATCGAT 229710 Query 28777 TTCGGAGTCTCGATTTGAGCATTACCCATTCTGAAACCACGTT--TCAACATTCCTTCAA 28834 || || | |||||| | |||||| |||||| |||||| |||| ||| ||| |||| | Sbjct 229711 TTAGGCGGCTCGATCTCAGCATTGCCCATTTTGAAAC--CGTTGGTCAGCATGCCTTTCA 229768 Query 28835 CATCTATCAACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGT 28894 ||| |||| ||||||||| ||||| |||||||| || || || || |||||||| ||| Sbjct 229769 GATCGATCAGCATGCAGTTGAACATCGGGAAGAAAGGGGAGTAGTCGAGATCGTGATAGT 229828 Query 28895 GAATCCAACCATTTTCGTGTGCTTGCATAACTTCAACAGGCAG---ATAATGCTTGGCGA 28951 | ||| || ||||| || ||| || || ||||| | |||| ||| Sbjct 229829 GGATCTCGCCGCGCTCGTGCGCCAGCACCACATCGCGCGGCAGGATCTGCTGCTGTGCGT 229888 Query 28952 AATGCTTACTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTT 29011 | || || ||||| || || | || |||||| || || || || || ||| ||||| Sbjct 229889 AGTGTTTTGCCACGATCCCGGCCAGCAGATCGCGCTGCGTCGGGATCACTTTGCTGTCTT 229948 Query 29012 TGTTTGCATTTTCATTCATGATTGATTCATCAGATTGCTTCATCAGTCCCATGAT-GCGT 29070 |||| ||||| || |||| | | ||| | || | | |||||| || |||| Sbjct 229949 TGTTGGCATTCTCGTTCAGCAGCGCCGCATTGGTCTGATCGACCAGTCCGCGAATGGCGT 230008 Query 29071 TTTGTCA-TG--TCTGAGTTCAGGTCGCGAGCGACATCGCGATCATAGCGATATTCAATG 29127 ||| | || ||||| | ||||| |||||||||||||| | ||| ||||||||| Sbjct 230009 GATGTAACTGGCTCTGA----CGATCGCGGGCGACATCGCGATCGTGGCGGTATTCAATG 230064 Query 29128 TATGCGCGAGCCA 29140 || ||||| |||| Sbjct 230065 TAGGCGCGGGCCA 230077 Score = 107 bits (118), Expect = 3e-18 Identities = 264/397 (66%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 27271 TGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCGGGGTTCCCCAAATAACCG 27330 |||||||| | ||| || ||||||||||| | || | | | ||| | |||| ||| ||| Sbjct 228208 TGCACTTCCTGCTGTTTACCGGCATTAAAGGGCCGCGCATCCGGGCTGCCCAGATAGCCG 228267 Query 27331 CAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATTGCCGCACTTAGGACATTCA 27390 ||||| || || ||||| | | ||| || |||||||| || ||||| Sbjct 228268 CAGACCCGCCGGGTAACGGAGACGCGCGCCGGATCGTGGTTGCCGCAATTCGGACAGGTG 228327 Query 27391 TATCCTTTAGATGTAGCAGTGAATTCGCCGTGATAACCGCATTCAAAACAAACATCAACT 27450 | || ||| ||||| ||||||| | ||||| || | || |||||| Sbjct 228328 AAGCCGCGGCTGGTACAGGTGAACTCGCCGTTGAAGCCGCACTCGTAGCACTCATCAATC 228387 Query 27451 GGGGTATTGGTCCCATAATACGGGGTATTC-CTATAAGC-ATAATCCCAAACATCTTCGA 27508 ||||||||||| || ||||| ||| | | | ||| |||||||| ||||| || | Sbjct 228388 GGGGTATTGGTGCCGTAATA--GGGCACGCGGTCGTAGCTGTAATCCCAGACATCCTCCA 228445 Query 27509 GAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGAAATAAAACCACCAGAAC 27568 | || || || || | | || |||||| ||||| ||||| | || || || ||| Sbjct 228446 GCGCCTTGAGGTTGTGCTGCACATTCGGGTATTCGCCGTAACAGATGAATCCGCCATTCG 228505 Query 27569 TAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACGGATTTGTATTATGACGAA 27628 ||||| | || |||||| ||||| ||||| || ||||| || | || Sbjct 228506 CCAGCGGCGGATAGGGCGCTTCAAAGTCGATTTTGTCGTAAGGATTGACCTTCTTCTCAA 228565 Query 27629 CGTCCAGATGGAAACTGTTGGTATAATAATCCTTATC 27665 |||| |||||||| |||||||| || || |||| || Sbjct 228566 CGTCGAGATGGAAGCTGTTGGTGTAGTAGCCCTTGTC 228602 >seq1 Length=970878 Score = 134 bits (148), Expect = 2e-26 Identities = 305/457 (67%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 32761 GGACTAAACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATTTTATTGATT 32820 || || ||||| ||||||| || | || ||| || | | | || || |||| Sbjct 158219 GGGCTGAACAGGGTGATATCTTCGCCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGC 158278 Query 32821 TGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGC 32880 || | ||| ||||||| ||| | | || || |||| ||||| ||||||||| ||| Sbjct 158279 TGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGC 158338 Query 32881 ACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCA 32940 || || | |||| | ||| |||||||||||||| || |||| || || ||||| ||| Sbjct 158339 ACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCA 158398 Query 32941 CGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATA 33000 || || |||||||| || ||| || ||||| ||||| || | || |||| |||||| Sbjct 158399 CGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATA 158458 Query 33001 ATACCAGTATG--ACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCAC 33058 || ||||| ||| | || || ||||| ||| ||||| ||| || Sbjct 158459 CAGCCGGTATGGAACG--CTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGATACGAC 158516 Query 33059 CACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGAACTAGCGGTTG 33118 | | ||||||||||| || || | || || ||| | || || | || | ||| | Sbjct 158517 CGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAGGTGG 158576 Query 33119 CGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGG 33178 |||| ||| || || || || | || ||| || || ||||| |||||||| | Sbjct 158577 CGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACGTG 158636 Query 33179 TCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 | || || || || |||| || || || ||||| || Sbjct 158637 TTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAG 158673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710234651941840