Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq1 237 1e-57 >seq1 Length=970878 Score = 237 bits (262), Expect = 1e-57 Identities = 310/426 (73%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 118889 GATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118948 ||| || ||||| || | || |||||| | |||||||||||||| |||||||| || Sbjct 156511 GATATCGTCAAAAACTACCGCCGGATCGTTAACAATGTTACGGATGATGTGGGTGTAAGA 156570 Query 118949 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTG-- 119006 || ||||| || ||||| ||||||||| || || | ||| |||||||| || | Sbjct 156571 ACGGGAGTGAATCGTCTCTGAGAACGCCCAGGTTTCAATCCAGGTTTCCAG--TTCAGGA 156628 Query 119007 -TCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 119065 ||| | | | ||| ||||| | ||||||| | |||||||| | |||||||| || Sbjct 156629 ATCG-AGATCAGCGGCAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATCGAATCCAGCAG 156687 Query 119066 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 119125 |||| ||||||||||||||||| ||||| || || || ||||||||||| | ||| Sbjct 156688 CGTCTGATACTTCAGGTTGCTGATAAAGATATGTTTTTCATGATCCGGCAGCGCCTGGTA 156747 Query 119126 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 119185 ||||| || || || | |||| || |||||||||||||||||||| | || ||||| Sbjct 156748 ATCGATGCGATCGCGTGAAACGTCGACCTCTTCCGGACGCCAGAAGAAGGAGAGCTGCTT 156807 Query 119186 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 119245 ||||||||||| || || || | | ||| |||||||| |||| | ||||| | Sbjct 156808 TTCGATCAGCTTTTCAAAGATGTCATATTTTTGCTGGTCGAAGCGCGCCACGTTTACGGA 156867 Query 119246 CTCGCCGAGGAACATCGGCTGAGTCAGGAAGTCGAATTTGTTCTGGTTGAAAGTGCTGTA 119305 || |||| |||||||||| |||| || ||||||||| ||||||| ||| Sbjct 156868 CTGACCGAAAAACATCGGCTCTTTCAGCTGATCATTTTTGTTCTGTGAGAAAGTGGAGTA 156927 Query 119306 AGACAT 119311 || ||| Sbjct 156928 AGCCAT 156933 Score = 185 bits (204), Expect = 8e-42 Identities = 670/1032 (65%), Gaps = 50/1032 (5%) Strand=Plus/Plus Query 119928 CGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATC 119987 || || ||||||| |||||| |||| |||| ||||| || || || | |||||| Sbjct 157376 CGCGGAGGCTCAATACCGTTGGTGGCATTGGAGATCTGCGACGAGGTTTCAGACGGCATC 157435 Query 119988 ATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTTCC 120047 | || ||||| || ||||| ||||| || || | || || |||||| ||||| Sbjct 157436 AGCGCAGACAGGGTCGAGTTGCGCAGGCCGTGCGTTTTAATCTCTTCACGCAGGCTTTCC 157495 Query 120048 CAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGATC 120107 || || | | ||| | || || | || | ||||||||||| |||||| Sbjct 157496 CAGTCGAGATGCAGCGGTTCGTTGCTGATCGCGTCCAGATCTTTCTTGTAGGTGTCGATA 157555 Query 120108 GGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAAGAGATCACATTTACCCAATTCTTTT 120167 |||||||||||||| | || ||||| || | ||| || ||| ||||| Sbjct 157556 GGCAGAATGCCCTGCGCATAGGTGGTTTCATTGAACCACGGGCAGGCACCTTGCTCTTTC 157615 Query 120168 GCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAAC- 120226 ||||| ||| || |||| ||| ||||||||||| | |||||| || || || | Sbjct 157616 GCCAGCTCATTTGAGGCTTTCAGCAGGTAATACTGAATCGCTTCAA--AGGTCTTGTGCG 157673 Query 120227 --AG--CGTT--CGCTGCACGAGGGTCGCTGTATTTCAGGCCACGCTTCGCCAGGTAGTA 120280 || | || |||||| ||| ||| || ||| |||||||||| ||||| Sbjct 157674 TCAGGCCATTGGCGCTGCCA-----TCGGAGTAGCGCACACCATGCTTCGCCAGATAGTA 157728 Query 120281 TGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAGT-CTTCTCTG--CCGC 120337 || ||||| | ||| |||||||||||||| || | | | | ||| | || Sbjct 157729 GGCGTAGTTGATGACGCCGATACCCAGAGTACGACGACCCATCGCGCCACGCTGGGCAGC 157788 Query 120338 CAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAAC---CAGTGTACG 120394 | | | ||| |||| |||||| || | ||| ||| | ||||| || ||| ||| Sbjct 157789 CGGGATCGGGTAGTCCTGATAGTCGAGCAGCGCATCAAGCGCACGTACGGCCAGGGTA-- 157846 Query 120395 GACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGAGT 120454 | ||| ||| || || || || | || | ||||||||||| ||||| || || Sbjct 157847 GCCAG-CTCTTCCAGATCGTCGAGGCTTTCGATGGCGCCGAGGTTGAACGCAGAGAGCGT 157905 Query 120455 ACACAGGGCCACTTCCCCCGGGTCGTTCGGGTCATTAATGTCCGTAATCGGATGTGTCGG 120514 ||||||||| | || || ||| ||| |||| || | ||| | ||||| Sbjct 157906 ACACAGGGCAATCTCACC------GTTTTCGTCGTTAACATCTTCCAGCGGTTTCGTCGG 157959 Query 120515 CAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGGGGC-CTGTTCGGGGTCGAACG 120573 |||||||||||||| ||| ||||| ||||| ||||| || || || ||||| |||| Sbjct 157960 CAGGGCGATTTCCAGGCAGAGGTTAGACTGGCGAACCGGCGCAATGCTC-GGGTCAAACG 158018 Query 120574 GGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAATACGGCCTGTCTGAGAACGCT 120633 |||| | ||||||||||| || |||| ||| | ||| |||||||| || | || | Sbjct 158019 GGCTGTGGGTGTTGCAGTGATCGACGTTCTGAATGTAGATACGGCCGGTAGAGGCGCGTT 158078 Query 120634 CCTGACCAAACACGGAGAAGGCATCTGCCGCCGAGATGGTTTTCTTCGCCACAGAAG--- 120690 |||| | || |||||| ||| |||| | | ||| | || | Sbjct 158079 CCTGCATCATCAGTGAGAAGAGATCGACCGCTTTAACACGCTGCTT----GCGGATGCTC 158134 Query 120691 -GAT-CTGCTTCCAGTTCCTCATAGAGCTGTTGGAATTTCTCTTGGTTAGAGAAGAAATA 120748 ||| ||||| | || | |||||| | | || | || || || | |||||| Sbjct 158135 TGATCCTGCTCATATTTGGT-ATAGAGGCGCTCAAACTCATCCTGATTGGCGAAGAATGC 158193 Query 120749 CTCATACAGCTTACCTTTTGCCACGTTA---GGATGGAACAATGTGATGTTCTTACCCTG 120805 |||||||| || | ||||| | || ||||| ||||| | | || | Sbjct 158194 GTCATACAG---GCC---AGGCACGTCAGACGGGCTGAACAGGGTGATATCTTCGCCTTT 158247 Query 120806 CTGGAGGCGAGAGTACAGCATTTTGTTCAACTGAAGTCCGTAGTCCACATGGCGAGCACG 120865 | | ||||| |||| || ||||| | ||| | || ||||||| || || | || Sbjct 158248 CAGCAGGCGCTGATACATCAGCTTGTTGAGCTGTACACCATAGTCCATGTGACGCACGCG 158307 Query 120866 AGTGCTCTCAGTACCACGGTTGTTCTTCAGCACAATCAGGCTTTCAAAATCCCAGTGCCA 120925 ||| ||| ||||||||||||||||||||| | ||||||||| | ||| ||||| Sbjct 158308 GTTGCCTTCAACACCACGGTTGTTCTTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCA 158367 Query 120926 CATCGGATAAAA 120937 |||||| || || Sbjct 158368 CATCGGGTAGAA 158379 Score = 158 bits (174), Expect = 1e-33 Identities = 276/392 (70%), Gaps = 10/392 (3%) Strand=Plus/Plus Query 118380 AGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCT 118439 ||||| || || ||||||| | ||||||||| || ||||| | || ||| || Sbjct 155969 AGGCCGACAGCCTGCATACGGATATTGGTGATGTACTCAATGTACTGGCAGAGAATATCT 156028 Query 118440 TTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTG 118498 ||||||||||||||||| || ||| | ||||||| | |||||| | ||||||||||| Sbjct 156029 TTGTTCAGGCCGATCATTGAGCCGCCGCTGAACAGATATTCTGCCC-ACTCTTTCTCCTG 156087 Query 118499 CACCGATGCGTCGATAAAGCCCTGTCGT-GC-CTCTTCGTAGCAATCTTCTGCCA-CACG 118555 || | ||| | |||| || || || |||||| ||| ||| | || | | | Sbjct 156088 CAGTGCTGCTTTCTTAAACAGCT--CGAAGCACTCTTCACGGCACTCTGCCGCAATCTCT 156145 Query 118556 TGCAAA-CAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGG 118614 | || | || | | || | |||| | ||| |||||||| | ||| || |||| Sbjct 156146 TTCATCTCCGG--ATCGTCTTCACCGCTGCGCAGCAGGTTCAGCATGTGCTGGGTGCCGG 156203 Query 118615 ACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTA 118674 || |||| |||||||| || |||||||| | || || |||| || || ||| | Sbjct 156204 TCAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATTGCCTTCCATCA 156263 Query 118675 CGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCA 118734 | |||||| |||| |||||||| ||||||||||| || ||||||||||||||||||| Sbjct 156264 GCTCACGCTCAGCGAACGCGAAGGAACAGGCGAAGCTGACATAGAAACGGATCGCTTCCA 156323 Query 118735 GTGCATTGATGTTGTGCAGACACAGATACAGC 118766 | ||||||| | | ||| || | ||| ||| Sbjct 156324 GCGCATTGACGCTCATCAGGCAGATATAGAGC 156355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477152409679280