Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq556 129 1e-24 seq85 129 1e-24 seq75 114 3e-20 seq3964 95.1 2e-14 seq42 89.7 1e-12 >seq556 Length=10369 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || || |||||||| || || || ||||| ||||| ||||| | Sbjct 255 TACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGG 196 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| ||||| | || || || ||||||| Sbjct 195 CGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAG 136 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| || || ||||| || |||||||| | || | Sbjct 135 GAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGA 76 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| |||| ||||| || || || ||||| Sbjct 75 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 27 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | ||| || || |||||||| || || || ||||| ||||| ||||| | Sbjct 481 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 422 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||||||||| | || || || |||||||| Sbjct 421 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 362 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || || || ||||| || | || || Sbjct 361 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 302 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| ||||| || || || ||||| Sbjct 301 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 255 >seq85 Length=66337 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| ||||| |||||||| || || || ||||| ||||| ||||| | Sbjct 66217 TACCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGG 66158 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| | || || || ||||||| Sbjct 66157 CGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAG 66098 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || || || || ||||| || | || | Sbjct 66097 GAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 66038 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| |||| ||||| || || || ||||| Sbjct 66037 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 65989 >seq75 Length=70221 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || ||||| || || || || ||||| || || ||||| | || | | || Sbjct 431 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCC 372 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || || ||||| | || || || ||||| || || |||||||| Sbjct 371 ATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 312 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| | || || || || ||||| || | || || || | || || Sbjct 311 GTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGAT 252 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| |||||| ||||| |||||||| Sbjct 251 CGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 216 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || ||||| || || || || ||||| ||||| ||||| | Sbjct 216 TACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGG 157 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| ||||| | || || || ||||| | Sbjct 156 CGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGG 97 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| | || || || || ||||| || | || | Sbjct 96 GAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 37 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 | || | || ||||||||||| |||| |||||| Sbjct 36 CCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTT 3 >seq3964 Length=299 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || ||||| || || || || ||||| || || ||||| | Sbjct 95 TACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGG 154 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| ||||| || | |||||| ||||| | Sbjct 155 CGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGG 214 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || ||||| | || || || || ||||| || | || | Sbjct 215 GAATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 274 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || ||||||||||| || Sbjct 275 CCTCGAGCGTGATCGTCTTGCCCGT 299 >seq42 Length=101213 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || || || || || || || | | | | || Sbjct 46133 CGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCA 46192 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | ||| || ||||| || || |||||||| Sbjct 46193 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTG 46252 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| | || || || || ||||| || | || || || | || ||| Sbjct 46253 TCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 46312 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| || | ||||| ||||| || ||| | ||| Sbjct 46313 GTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTGATT 46351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981747080139091