Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq13 196 5e-45 seq2 122 9e-23 seq1 87.8 2e-12 >seq13 Length=199142 Score = 196 bits (216), Expect = 5e-45 Identities = 152/181 (84%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 61282 AGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTA 61341 ||||| |||||||||||||| | || ||||||||||| || || || || || |||||| Sbjct 145328 AGACTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTA 145387 Query 61342 AAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTA 61401 || || || ||||| || || || ||||| |||||||||||||| ||||| ||||| ||| Sbjct 145388 AAACGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTA 145447 Query 61402 ACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 61461 |||||||||||||| ||||| || ||||||||||| |||||||| || || ||||||||| Sbjct 145448 ACTGCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCA 145507 Query 61462 A 61462 | Sbjct 145508 A 145508 >seq2 Length=722220 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 61287 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCG 61346 || ||| ||||| || | || || || |||| || || |||||| ||||||||||| Sbjct 515055 CTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCG 515114 Query 61347 AACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 61406 || || || ||||| || || |||||||| ||||||||||| || ||||| | | || Sbjct 515115 CACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGC 515174 Query 61407 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 ||| ||| ||||||| || |||||||||||| ||||| ||||| ||||| || Sbjct 515175 ATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 515231 >seq1 Length=970878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 || |||||||| || || | ||||| | || ||||| ||| || ||||| || | Sbjct 158285 CCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGCACCAGC 158344 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 ||| | || | ||| | ||||||||||| || || || || || ||||| |||| Sbjct 158345 AGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCACGAACG 158404 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || || |||||||| || || || || || |||||||| || |||| || ||| || Sbjct 158405 CCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATACAGCCG 158464 Query 142083 GTATGTCGAA--CTTCACC 142099 ||||| ||| ||||||| Sbjct 158465 GTATG--GAACGCTTCACC 158481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535246984256720