Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq13 192 6e-44 seq2 131 2e-25 seq1 96.9 4e-15 >seq13 Length=199142 Score = 192 bits (212), Expect = 6e-44 Identities = 151/181 (83%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 62333 AGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTA 62392 ||||| |||||||||||||| | || ||||| |||||||| || || || || |||||| Sbjct 145328 AGACTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTA 145387 Query 62393 AAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTA 62452 || || || ||||| || || || ||||| |||| ||||||||| ||||| ||||| ||| Sbjct 145388 AAACGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTA 145447 Query 62453 ACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 62512 |||||||||||||| ||||| || ||||||||||| |||||||| || || ||||||||| Sbjct 145448 ACTGCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCA 145507 Query 62513 A 62513 | Sbjct 145508 A 145508 >seq2 Length=722220 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 62338 CTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 62397 || ||| ||||| || | || || || ||||||| || |||||| ||||||||||| Sbjct 515055 CTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCG 515114 Query 62398 AACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGC 62457 || || |||||||| || || ||||||| ||||||||||| |||||||| | | || Sbjct 515115 CACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGC 515174 Query 62458 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 ||| ||| ||||||| || |||||||||||| ||||| ||||| ||||| || Sbjct 515175 ATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 515231 >seq1 Length=970878 Score = 96.9 bits (106), Expect = 4e-15 Identities = 281/428 (66%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 142382 CCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAAC 142441 || |||||||| || | | ||||| | || || || ||| || ||||| |||| | Sbjct 158285 CCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGCACCAGC 158344 Query 142442 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATA 142501 ||| | || | ||| | ||||||||||| || || || || || || ||||||| Sbjct 158345 AGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCACGAACG 158404 Query 142502 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142561 || || |||||||| || || || || || |||||||| || |||| || ||| || Sbjct 158405 CCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATACAGCCG 158464 Query 142562 GTATGTCGAA--CTTCACCCATACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGT 142619 ||||| ||| ||||||| | |||| || ||||| | ||| ||| Sbjct 158465 GTATG--GAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGATACGACCGGCGT 158522 Query 142620 TGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTA 142678 |||||||||| || || || | ||| | ||||| | ||||| ||| || || ||| Sbjct 158523 TGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTG-CGCTGGAGGTGGCGTTG 158581 Query 142679 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGA 142738 || || | | || ||| || || | ||||| |||||| || ||||| Sbjct 158582 ATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACGTGTTGGG 158641 Query 142739 GTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCA 142798 || || | || | ||| ||||| || |||| || | || | || || | |||||| Sbjct 158642 GTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTCGAGATCGCATCA 158701 Query 142799 TAAAAACG 142806 || ||||| Sbjct 158702 TAGAAACG 158709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540827339955280